当前解析结果
SmilChr04G003990| 统一新 Gene ID | SmilChr04G003990 |
|---|---|
| 名称 | SmilChr04G003990 |
| 描述 | monosaccharide-sensing protein 2-like |
| 染色体 / SeqID | Chr04 / NC_080390.1 |
| 坐标与链方向 | 55307311 - 55310815 / + |
| NCBI Gene ID | LOC131020850 |
|---|---|
| GeneID | 131020850 |
| locus_tag | - |
| NCBI Name | LOC131020850 |
| 原始查询 | SmilChr04G003990 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | monosaccharide-sensing protein 2-like |
| 产物 | monosaccharide-sensing protein 2-like |
| Arabidopsis | AT4G35300 (TMT2)tonoplast monosaccharide transporter2 [Source:NCBI gene (formerly Entrezgene);Acc:829684] identity=51.3; qcov=1.03; evalue=0; confidence=high |
| Rice | Os10g0539900 (TMT1)- identity=52.8; qcov=1.05; evalue=0; confidence=high |
| GO | GO:0005366 (myo-inositol:proton symporter activity); GO:0016020 (membrane); GO:0055085 (transmembrane transport) |
| KEGG | - |
| Pfam | PF00083 (Sugar_tr); PF07690 (MFS_1) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131020850 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Vacuole membrane | 液泡膜 | 0.80000 | XP_057805877.1 |
| 2 | Vacuole | 液泡 | 0.60000 | XP_057805877.1 |
| 3 | Cell membrane | 细胞膜 | 0.40000 | XP_057805877.1 |
| 4 | Nucleus | 细胞核 | 0.00000 | XP_057805877.1 |
| 5 | Chromosome | 染色体 | 0.00000 | XP_057805877.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr4:55307605 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | D11 |
Chr4:55307611 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | D11 |
Chr4:55307647 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | A15,C28,C79 |
Chr4:55307931 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B19,B9,C23 |
Chr4:55308139 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B27,C73,C80 |
Chr4:55308261 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | A14,B119,C3,C51,C86 |
Chr4:55308289 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B27,C73,C80 |
Chr4:55308306 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | A18 |
Chr4:55308715 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | A6,C53 |
Chr4:55308716 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B11,B112,B37 |
Chr4:55308724 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | D10 |
Chr4:55308755 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B65 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。
XP_057805877.1PF00083
Sugar_tr 7-227 aa
PF07690
MFS_1 12-205 aa
PF00083
Sugar_tr 484-695 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057805877.1 |
Pfam | PF00083 |
Sugar_tr | Family | 7 | 227 | 5.7e-90 | 303.1 | Sugar (and other) transporter |
XP_057805877.1 |
Pfam | PF07690 |
MFS_1 | Family | 12 | 205 | 4e-18 | 66.2 | Major Facilitator Superfamily |
XP_057805877.1 |
Pfam | PF00083 |
Sugar_tr | Family | 484 | 695 | 5.7e-90 | 303.1 | Sugar (and other) transporter |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。