当前解析结果
SmilChr04G003999| 统一新 Gene ID | SmilChr04G003999 |
|---|---|
| 名称 | SmilChr04G003999 |
| 描述 | zinc finger protein ZAT3-like |
| 染色体 / SeqID | Chr04 / NC_080390.1 |
| 坐标与链方向 | 55356537 - 55357606 / - |
| NCBI Gene ID | LOC131020867 |
|---|---|
| GeneID | 131020867 |
| locus_tag | - |
| NCBI Name | LOC131020867 |
| 原始查询 | SmilChr04G003999 |
| 来源 | GFF basic annotation; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | zinc finger protein ZAT3-like |
| 产物 | zinc finger protein ZAT3-like |
| Arabidopsis | AT4G35280 (DAZ2)C2H2-like zinc finger protein [Source:NCBI gene (formerly Entrezgene);Acc:829681] identity=44.5; qcov=0.977; evalue=3.8e-74; confidence=medium |
| Rice | Os04g0552400 (OsSTA129)- identity=35.5; qcov=0.455; evalue=1.67e-20; confidence=low |
| GO | - |
| KEGG | - |
| Pfam | PF00096 (zf-C2H2); PF13912 (zf-C2H2_6) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131020867 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Nucleus | 细胞核 | 1.00000 | XP_057805895.1 |
| 2 | Chromosome | 染色体 | 0.00000 | XP_057805895.1 |
| 3 | Centromere | 着丝粒 | 0.00000 | XP_057805895.1 |
| 4 | Chromatin | 染色质 | 0.00000 | XP_057805895.1 |
| 5 | Telomere | 端粒 | 0.00000 | XP_057805895.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr4:55356682 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C50 |
Chr4:55356684 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | D10 |
Chr4:55356715 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B120 |
Chr4:55356740 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B138,D11 |
Chr4:55356931 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B75,B91,C42 |
Chr4:55357415 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B133,B139,B66,C34 |
Chr4:55357418 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B34,D11 |
Chr4:55357473 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B131,B68 |
Chr4:55357474 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B35 |
Chr4:55357494 |
CG |
C |
1bp_deletion | frameshift_variant | 42 | A10,A11,A20,A3,A9,B117,B12,B124,B130,B17,B25,B30,B42,B46,B51,B61,B62,B67,B69,B80,B82,B93,B94,C15,C17,C18,C25,C26,C30,C36,C37,C41,C45,C53,C57,C61,C86,D2,D3,D5,D6,D9 |
Chr4:55357497 |
CGT |
C |
2bp_deletion | frameshift_variant | 42 | A10,A11,A20,A3,A9,B117,B12,B124,B130,B17,B25,B30,B42,B46,B51,B61,B62,B67,B69,B80,B82,B93,B94,C15,C17,C18,C25,C26,C30,C36,C37,C41,C45,C53,C57,C61,C86,D2,D3,D5,D6,D9 |
Chr4:55357567 |
GT |
G |
1bp_deletion | frameshift_variant | 1 | B68 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057805895.1PF13912
zf-C2H2_6 69-93 aa
PF00096
zf-C2H2 70-89 aa
PF13912
zf-C2H2_6 170-194 aa
PF13912
zf-C2H2_6 242-266 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057805895.1 |
Pfam | PF13912 |
zf-C2H2_6 | Domain | 69 | 93 | 4.5e-30 | 103.7 | C2H2-type zinc finger |
XP_057805895.1 |
Pfam | PF00096 |
zf-C2H2 | Domain | 70 | 89 | 1.6e-06 | 28.9 | Zinc finger, C2H2 type |
XP_057805895.1 |
Pfam | PF13912 |
zf-C2H2_6 | Domain | 170 | 194 | 4.5e-30 | 103.7 | C2H2-type zinc finger |
XP_057805895.1 |
Pfam | PF13912 |
zf-C2H2_6 | Domain | 242 | 266 | 4.5e-30 | 103.7 | C2H2-type zinc finger |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。