Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr04G004016`

染色体: Chr04 坐标: 55430396-55432322 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr04G004016`
名称	SmilChr04G004016
描述	acetylserotonin O-methyltransferase-like
染色体 / SeqID	Chr04 / NC_080390.1
坐标与链方向	55430396 - 55432322 / `-`

ID 对照

NCBI Gene ID	`LOC131020885`
GeneID	`131020885`
locus_tag	`-`
NCBI Name	`LOC131020885`
原始查询	`SmilChr04G004016`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	acetylserotonin O-methyltransferase-like
产物	acetylserotonin O-methyltransferase-like
Arabidopsis	`AT4G35160` (AT4G35160) O-methyltransferase family protein [Source:NCBI gene (formerly Entrezgene);Acc:829668] identity=48.5; qcov=1.02; evalue=7.67e-111; confidence=high
Rice	`Os08g0290700` - identity=36.6; qcov=0.986; evalue=1.65e-69; confidence=medium
GO	GO:0008171 (O-methyltransferase activity); GO:0008757 (S-adenosylmethionine-dependent methyltransferase activity); GO:0019438 (GO:0019438); GO:0032259 (methylation); GO:0046983 (protein dimerization activity)
KEGG	smil00380 (Tryptophan metabolism - Salvia miltiorrhiza (redroot sage)); smil01100 (Metabolic pathways - Salvia miltiorrhiza (redroot sage)); smil01110 (Biosynthesis of secondary metabolites - Salvia miltiorrhiza (redroot sage))
Pfam	PF00891 (Methyltransf_2); PF08100 (Dimerisation)
InterPro	-
eggNOG	-
NR	GeneID:131020885

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cytoplasm	细胞质	1.00000	`XP_057805913.1`
2	Cytosol	细胞质基质	1.00000	`XP_057805913.1`
3	Nucleus	细胞核	0.00000	`XP_057805913.1`
4	Chromosome	染色体	0.00000	`XP_057805913.1`
5	Centromere	着丝粒	0.00000	`XP_057805913.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr4:55430490`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	A21,B135,B60,C2,C80
`Chr4:55430596`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	A21,C2
`Chr4:55430629`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	A13,C59,C8,C85
`Chr4:55430646`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	A23,B139
`Chr4:55430663`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	A21,B138,C2
`Chr4:55430694`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	B5,B57,B59,B79,B97
`Chr4:55430731`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	A21,B135,B60,C2,C80
`Chr4:55431492`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B104,C59,C8,C85
`Chr4:55431500`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	C59,C8,C85
`Chr4:55431522`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C66
`Chr4:55431648`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	D10
`Chr4:55431682`	`TG`	`T`	1bp_deletion	frameshift_variant	2	A25,B3

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057805913.1

366 aa

183

366

Dimerisation

Methyltransf_2

PF08100 Dimerisation 33-113 aa PF00891 Methyltransf_2 141-348 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057805913.1`	Pfam	`PF08100`	Dimerisation	Domain	33	113	4.2e-20	72.2	O-methyltransferase dimerisation domain
`XP_057805913.1`	Pfam	`PF00891`	Methyltransf_2	Domain	141	348	2.2e-54	184.7	O-methyltransferase domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA

XM_057949930.1
TTATAGTAGTCGGTTGCCTATATAAGGACGAAGGGATACGATACAATACTATACTATATGGTTAAAAACACAAGAAACATTAATCATTAATCATCATCATGTATCACGTTACTTACTTATATTGTCAGCATTATATATCTAATATATGTCTGCGTTGTGTTCATGTCCGAAGCCACAAAATCTCCTTCAATTCGAAAAATGGAAGCTATTAAATCAATGAAAGAAGCCAACGCGCGAGAGAAGGCTGAGGTCGACATATG...

CDS

1 records

下载 CDS FASTA

LOC131020885
ATGTCCGAAGCCACAAAATCTCCTTCAATTCGAAAAATGGAAGCTATTAAATCAATGAAAGAAGCCAACGCGCGAGAGAAGGCTGAGGTCGACATATGGCAATACGTATTCGGCTTCACTCCGATGGCGGTGGTCAAGTGCGCGATCGAGCTCCGCATCGCCGACGCCTTGGAGGCCCACGGCGGCGCGATGTCGCTTCCCGACCTCGCCTCCGCCGTCGCCTGCTCGGCCCCGGCCCTCCGCCGCATCATGCGGTATTT...

Protein

1 records

下载 Protein FASTA

XP_057805913.1
MSEATKSPSIRKMEAIKSMKEANAREKAEVDIWQYVFGFTPMAVVKCAIELRIADALEAHGGAMSLPDLASAVACSAPALRRIMRYLIHRGFFELRAATGQYAQTPLSRLLLRGDDEARLNNNSLASFVLMESSPVMLAPWHALSSRASVGGGSAFEAAHGRDVWEFASRDPGHSKLINDAMASHARRAAGEILERYGEAFEGIGSLVDVGGGDGTALRSVVAARPGIRGINFDLPHVVAAAERVEGVEHVGGDMFKQVP...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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JBrowse

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