Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr04G004019`

染色体: Chr04 坐标: 55435040-55437416 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr04G004019`
名称	SmilChr04G004019
描述	heterodimeric geranylgeranyl pyrophosphate synthase small subunit, chloroplastic
染色体 / SeqID	Chr04 / NC_080390.1
坐标与链方向	55435040 - 55437416 / `+`

ID 对照

NCBI Gene ID	`LOC131020886`
GeneID	`131020886`
locus_tag	`-`
NCBI Name	`LOC131020886`
原始查询	`SmilChr04G004019`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	heterodimeric geranylgeranyl pyrophosphate synthase small subunit, chloroplastic
产物	heterodimeric geranylgeranyl pyrophosphate synthase small subunit%2C chloroplastic
Arabidopsis	`AT4G38460` (GGR) geranylgeranyl reductase [Source:NCBI gene (formerly Entrezgene);Acc:830002] identity=66.8; qcov=0.964; evalue=5.73e-141; confidence=high
Rice	`Os02g0668100` (OsGGPPS2) - identity=51.2; qcov=1.03; evalue=1.26e-117; confidence=high
GO	GO:0004659 (prenyltransferase activity); GO:0008299 (isoprenoid biosynthetic process)
KEGG	smil00900 (Terpenoid backbone biosynthesis - Salvia miltiorrhiza (redroot sage)); smil01100 (Metabolic pathways - Salvia miltiorrhiza (redroot sage)); smil01110 (Biosynthesis of secondary metabolites - Salvia miltiorrhiza (redroot sage))
Pfam	PF00348 (polyprenyl_synt)
InterPro	-
eggNOG	-
NR	GeneID:131020886

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Chloroplast	叶绿体	0.80000	`XP_057805914.1`
2	Mitochondrion	线粒体	0.20000	`XP_057805914.1`
3	Endoplasmic reticulum	内质网	0.20000	`XP_057805914.1`
4	Chloroplast stroma	叶绿体基质	0.20000	`XP_057805914.1`
5	Nucleus	细胞核	0.00000	`XP_057805914.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr4:55435370`	`C`	`CAG`	2bp_insertion	frameshift_variant	162	A1,A10,A11,A13,A14,A16,A18,A19,A20,A23,A24,A25,A3,A4,A6,A7,A8,B10,B100,B102,B103,B105,B109,B11,B111,B115,B120,B122,B125,B126,B127,B128,B130,B132,B133,B135,B139,B14,B140,B15,B16,B17,B18,B19,B2,B21,B22,B23,B24,B25,B26,B27,B29,B3,B30,B31,B32,B34,B35,B38,B40,B41,B43,B46,B47,B49,B5,B51,B53,B54,B57,B58,B59,B6,B60,B61,B63,B64,B65,B66,B68,B7,B70,B71,B72,B73,B75,B78,B83,B86,B87,B89,B9,B90,B91,B92,B93,B94,B96,B97,B99,C1,C10,C14,C15,C16,C18,C19,C20,C21,C22,C28,C29,C3,C30,C32,C34,C35,C39,C4,C40,C41,C42,C43,C47,C49,C5,C51,C53,C54,C55,C56,C57,C58,C59,C6,C61,C63,C64,C65,C66,C7,C70,C72,C73,C74,C75,C77,C78,C81,C82,C86,C9,D1,D11,D2,D3,D5,D6,D7,D8,D9
`Chr4:55435371`	`T`	`TG`	1bp_insertion	frameshift_variant	156	A1,A10,A11,A13,A14,A16,A18,A19,A20,A23,A24,A25,A3,A4,A6,A7,A8,B10,B100,B102,B103,B105,B109,B11,B115,B120,B122,B125,B126,B127,B128,B130,B132,B133,B135,B139,B14,B140,B15,B16,B17,B18,B19,B2,B21,B22,B23,B24,B25,B26,B27,B29,B3,B30,B31,B32,B34,B35,B38,B40,B41,B43,B47,B49,B5,B51,B53,B54,B57,B58,B6,B60,B63,B64,B65,B66,B68,B7,B70,B71,B72,B73,B75,B78,B83,B86,B87,B89,B9,B90,B91,B92,B93,B94,B96,B97,B99,C1,C10,C14,C15,C16,C18,C19,C20,C21,C22,C28,C29,C3,C30,C32,C34,C35,C39,C4,C40,C41,C42,C43,C47,C49,C5,C51,C53,C54,C55,C56,C57,C58,C59,C6,C61,C63,C64,C65,C7,C70,C72,C73,C74,C75,C77,C81,C82,C86,C9,D1,D11,D2,D3,D5,D6,D7,D8,D9
`Chr4:55435372`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B111,B47,B97
`Chr4:55435381`	`C`	`CT`	1bp_insertion	frameshift_variant	88	A1,A10,A11,A13,A14,A18,A23,A24,A6,A8,B10,B100,B102,B109,B115,B118,B122,B125,B126,B127,B132,B135,B14,B18,B19,B2,B23,B25,B29,B3,B31,B32,B34,B35,B40,B43,B5,B53,B60,B63,B65,B66,B68,B70,B71,B75,B78,B86,B9,B90,B92,B93,B94,B96,B97,B99,C1,C10,C14,C16,C18,C20,C21,C22,C28,C29,C30,C34,C35,C4,C40,C41,C43,C5,C55,C58,C6,C61,C73,C75,C77,C78,C86,C9,D1,D2,D5,D9
`Chr4:55435390`	`C`	`T`	EMS_canonical_SNV	stop_gained	166	A1,A10,A11,A13,A14,A16,A18,A19,A23,A24,A25,A3,A4,A6,A7,A8,B10,B100,B102,B103,B105,B109,B11,B111,B115,B118,B120,B121,B122,B125,B126,B127,B128,B130,B132,B133,B135,B139,B14,B140,B15,B16,B17,B18,B19,B2,B21,B22,B23,B24,B25,B26,B27,B29,B3,B30,B31,B32,B34,B35,B38,B40,B41,B43,B46,B47,B49,B5,B51,B53,B54,B57,B58,B59,B6,B60,B61,B63,B64,B65,B66,B68,B7,B70,B71,B72,B73,B75,B78,B83,B85,B86,B87,B89,B9,B90,B91,B92,B93,B94,B96,B97,B99,C1,C10,C13,C14,C15,C18,C19,C20,C21,C22,C28,C29,C3,C30,C32,C33,C34,C35,C39,C4,C40,C41,C42,C43,C47,C49,C5,C51,C53,C54,C55,C56,C57,C58,C59,C6,C61,C63,C64,C65,C66,C68,C7,C70,C72,C73,C74,C75,C77,C78,C81,C82,C86,C9,D1,D11,D2,D3,D5,D6,D7,D8,D9
`Chr4:55435401`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	D8
`Chr4:55435462`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B67,C5
`Chr4:55435474`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	B22,B23,B72,C32,C68
`Chr4:55435476`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	A3,B48,B54
`Chr4:55435523`	`G`	`GT`	1bp_insertion	frameshift_variant	6	B11,B130,B26,B41,B85,B87
`Chr4:55436927`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B18,C10,C84,D10
`Chr4:55436960`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B18,C10,C84,D10

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057805914.1

331 aa

166

331

polyprenyl_synt

PF00348 polyprenyl_synt 65-294 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057805914.1`	Pfam	`PF00348`	polyprenyl_synt	Domain	65	294	1.1e-33	117.2	Polyprenyl synthetase

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA

XM_057949931.1
ATCCTACAAATCAAACAGGAAACAGCCAATTCCCATGTGATTAAAATTGCTAAAAGTAAACATATGCAATTAAGAGGTGGTAGCCAATGACGAGACGCCACGTCAGCAGCAGGCGCACAAGCTTCGGTTTTGTCAAACATCTCATCTCTTTTCCCATCACCACTTCACCAGCATTTGCTCTTCACTCTAATCTCTACCTCTGCAAATTTTAGGTTCTAGAAAGAAAATCACTGCCAAATTCGAAACAATCAACCTGAAAT...

CDS

1 records

下载 CDS FASTA

LOC131020886
ATGCTTTTCTCTTCCGTAATCACGTCGACTCCCCATGTTTGCTTGCCGAAGGTCACTCGTCCTGCGCTCCGCCGCACAATTCGATGCTCCGCCGCATCGGTTTCACCTGGATTTGATCTCAAGACGTATTGGACGTCTCTAATTAAAGAAATCGATCAGAAGCTCGACGAGGCGATTCCTGTGAAGTACCCGCAGCAGATCTATGAGGCAATGCGCTATTCAGTTTTGGCGAAGGGAGCTAAGAGAGCACCGCCGGTTAT...

Protein

1 records

下载 Protein FASTA

XP_057805914.1
MLFSSVITSTPHVCLPKVTRPALRRTIRCSAASVSPGFDLKTYWTSLIKEIDQKLDEAIPVKYPQQIYEAMRYSVLAKGAKRAPPVMCVAACEIFGGNRLAAFPTACALEMVHSASLIHDDLPCMDDDPSRRGQPSNHTVFGVDMAILAGDALFPLGFRHIVSQTPTDLVPHTRLLRVIAEIARAVGSTGMAAGQFLDLEGGPNAVDLVQEKKFGEMGQCSAVCGGLLAGASDDEIEHLRKYGRAVGILYEVVDDIRETK...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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JBrowse

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