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中文 EN

Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。
示例

当前解析结果

SmilChr04G004029

染色体: Chr04 坐标: 55553177-55556318 链方向: - 类型: protein_coding

基本信息

统一新 Gene IDSmilChr04G004029
名称SmilChr04G004029
描述pentatricopeptide repeat-containing protein At1g31430
染色体 / SeqIDChr04 / NC_080390.1
坐标与链方向55553177 - 55556318 / -

ID 对照

NCBI Gene IDLOC131020896
GeneID131020896
locus_tag-
NCBI NameLOC131020896
原始查询SmilChr04G004029

查看完整 ID 对照表

功能注释

来源GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述pentatricopeptide repeat-containing protein At1g31430
产物pentatricopeptide repeat-containing protein At1g31430
ArabidopsisAT1G31430 (AT1G31430)
Pentatricopeptide repeat (PPR-like) superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:840033]
identity=56.2; qcov=0.903; evalue=0; confidence=high
RiceOs06g0597500 (SPED1)
-
identity=47.4; qcov=0.88; evalue=0; confidence=high
GOGO:0003723 (RNA binding); GO:0005515 (protein binding); GO:0009451 (RNA modification)
KEGG-
PfamPF01535 (PPR); PF12854 (PPR_1); PF13041 (PPR_2); PF13812 (PPR_3); PF20431 (E_motif)
InterPro-
eggNOG-
NRGeneID:131020896

打开注释模块

亚细胞定位 Top 5

Rank定位位置中文ScoreProtein ID
1 Mitochondrion 线粒体 1.00000 XP_057805921.1
2 Nucleus 细胞核 0.00000 XP_057805921.1
3 Chromosome 染色体 0.00000 XP_057805921.1
4 Centromere 着丝粒 0.00000 XP_057805921.1
5 Chromatin 染色质 0.00000 XP_057805921.1

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置 REF ALT 类型 影响 携带材料数 材料
Chr4:55554136 G A EMS_canonical_SNV CDS_variant 1 C72
Chr4:55554149 C T EMS_canonical_SNV CDS_variant 5 A11,B68,B81,C14,C78
Chr4:55554162 C T EMS_canonical_SNV CDS_variant 2 B28,D11
Chr4:55554177 C T EMS_canonical_SNV CDS_variant 3 A21,B35,C35
Chr4:55554246 C T EMS_canonical_SNV CDS_variant 3 A13,B137,B79
Chr4:55554249 C T EMS_canonical_SNV CDS_variant 4 A13,B137,B79,D6
Chr4:55554697 C T EMS_canonical_SNV CDS_variant 1 C38
Chr4:55554801 C T EMS_canonical_SNV CDS_variant 2 B138,B91
Chr4:55554802 G A EMS_canonical_SNV CDS_variant 5 B112,B3,B37,B86,C31
Chr4:55555216 C T EMS_canonical_SNV CDS_variant 1 C78
Chr4:55555272 C T EMS_canonical_SNV CDS_variant 4 B48,C20,C77,C81
Chr4:55555472 C T EMS_canonical_SNV CDS_variant 1 C9

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057805921.1
585 aa
N
1
292
585
PPR_2
PPR
PPR_2
PPR
PPR
PPR
PPR_1
PPR_2
PPR
PPR_3
PPR
PPR_2
PPR_3
PPR
PPR
E_motif
C
PF13041 PPR_2 63-110 aa PF01535 PPR 67-95 aa PF13041 PPR_2 165-212 aa PF01535 PPR 167-194 aa PF01535 PPR 240-267 aa PF01535 PPR 269-292 aa PF12854 PPR_1 297-325 aa PF13041 PPR_2 297-344 aa PF01535 PPR 299-329 aa PF13812 PPR_3 320-365 aa PF01535 PPR 372-395 aa PF13041 PPR_2 398-445 aa PF13812 PPR_3 399-444 aa PF01535 PPR 401-430 aa PF01535 PPR 472-495 aa PF20431 E_motif 518-578 aa
XP_057805922.1
585 aa
N
1
292
585
PPR_2
PPR
PPR_2
PPR
PPR
PPR
PPR_1
PPR_2
PPR
PPR_3
PPR
PPR_2
PPR_3
PPR
PPR
E_motif
C
PF13041 PPR_2 63-110 aa PF01535 PPR 67-95 aa PF13041 PPR_2 165-212 aa PF01535 PPR 167-194 aa PF01535 PPR 240-267 aa PF01535 PPR 269-292 aa PF12854 PPR_1 297-325 aa PF13041 PPR_2 297-344 aa PF01535 PPR 299-329 aa PF13812 PPR_3 320-365 aa PF01535 PPR 372-395 aa PF13041 PPR_2 398-445 aa PF13812 PPR_3 399-444 aa PF01535 PPR 401-430 aa PF01535 PPR 472-495 aa PF20431 E_motif 518-578 aa
XP_057805923.1
585 aa
N
1
292
585
PPR_2
PPR
PPR_2
PPR
PPR
PPR
PPR_1
PPR_2
PPR
PPR_3
PPR
PPR_2
PPR_3
PPR
PPR
E_motif
C
PF13041 PPR_2 63-110 aa PF01535 PPR 67-95 aa PF13041 PPR_2 165-212 aa PF01535 PPR 167-194 aa PF01535 PPR 240-267 aa PF01535 PPR 269-292 aa PF12854 PPR_1 297-325 aa PF13041 PPR_2 297-344 aa PF01535 PPR 299-329 aa PF13812 PPR_3 320-365 aa PF01535 PPR 372-395 aa PF13041 PPR_2 398-445 aa PF13812 PPR_3 399-444 aa PF01535 PPR 401-430 aa PF01535 PPR 472-495 aa PF20431 E_motif 518-578 aa
XP_057805924.1
585 aa
N
1
292
585
PPR_2
PPR
PPR_2
PPR
PPR
PPR
PPR_1
PPR_2
PPR
PPR_3
PPR
PPR_2
PPR_3
PPR
PPR
E_motif
C
PF13041 PPR_2 63-110 aa PF01535 PPR 67-95 aa PF13041 PPR_2 165-212 aa PF01535 PPR 167-194 aa PF01535 PPR 240-267 aa PF01535 PPR 269-292 aa PF12854 PPR_1 297-325 aa PF13041 PPR_2 297-344 aa PF01535 PPR 299-329 aa PF13812 PPR_3 320-365 aa PF01535 PPR 372-395 aa PF13041 PPR_2 398-445 aa PF13812 PPR_3 399-444 aa PF01535 PPR 401-430 aa PF01535 PPR 472-495 aa PF20431 E_motif 518-578 aa
Protein ID 来源 结构域编号 结构域名称 类型 起始 aa 终止 aa E-value Score 说明
XP_057805921.1 Pfam PF13041 PPR_2 Repeat 63 110 1.1e-60 202.3 PPR repeat family
XP_057805921.1 Pfam PF01535 PPR Repeat 67 95 1.3e-64 210.8 PPR repeat
XP_057805921.1 Pfam PF13041 PPR_2 Repeat 165 212 1.1e-60 202.3 PPR repeat family
XP_057805921.1 Pfam PF01535 PPR Repeat 167 194 1.3e-64 210.8 PPR repeat
XP_057805921.1 Pfam PF01535 PPR Repeat 240 267 1.3e-64 210.8 PPR repeat
XP_057805921.1 Pfam PF01535 PPR Repeat 269 292 1.3e-64 210.8 PPR repeat
XP_057805921.1 Pfam PF12854 PPR_1 Repeat 297 325 6.4e-33 112.9 PPR repeat
XP_057805921.1 Pfam PF13041 PPR_2 Repeat 297 344 1.1e-60 202.3 PPR repeat family
XP_057805921.1 Pfam PF01535 PPR Repeat 299 329 1.3e-64 210.8 PPR repeat
XP_057805921.1 Pfam PF13812 PPR_3 Repeat 320 365 1.1e-23 83.8 Pentatricopeptide repeat domain
XP_057805921.1 Pfam PF01535 PPR Repeat 372 395 1.3e-64 210.8 PPR repeat
XP_057805921.1 Pfam PF13041 PPR_2 Repeat 398 445 1.1e-60 202.3 PPR repeat family
XP_057805921.1 Pfam PF13812 PPR_3 Repeat 399 444 1.1e-23 83.8 Pentatricopeptide repeat domain
XP_057805921.1 Pfam PF01535 PPR Repeat 401 430 1.3e-64 210.8 PPR repeat
XP_057805921.1 Pfam PF01535 PPR Repeat 472 495 1.3e-64 210.8 PPR repeat
XP_057805921.1 Pfam PF20431 E_motif Repeat 518 578 3.1e-21 76.1 E motif
XP_057805922.1 Pfam PF13041 PPR_2 Repeat 63 110 1.1e-60 202.3 PPR repeat family
XP_057805922.1 Pfam PF01535 PPR Repeat 67 95 1.3e-64 210.8 PPR repeat
XP_057805922.1 Pfam PF13041 PPR_2 Repeat 165 212 1.1e-60 202.3 PPR repeat family
XP_057805922.1 Pfam PF01535 PPR Repeat 167 194 1.3e-64 210.8 PPR repeat
XP_057805922.1 Pfam PF01535 PPR Repeat 240 267 1.3e-64 210.8 PPR repeat
XP_057805922.1 Pfam PF01535 PPR Repeat 269 292 1.3e-64 210.8 PPR repeat
XP_057805922.1 Pfam PF12854 PPR_1 Repeat 297 325 6.4e-33 112.9 PPR repeat
XP_057805922.1 Pfam PF13041 PPR_2 Repeat 297 344 1.1e-60 202.3 PPR repeat family
XP_057805922.1 Pfam PF01535 PPR Repeat 299 329 1.3e-64 210.8 PPR repeat
XP_057805922.1 Pfam PF13812 PPR_3 Repeat 320 365 1.1e-23 83.8 Pentatricopeptide repeat domain
XP_057805922.1 Pfam PF01535 PPR Repeat 372 395 1.3e-64 210.8 PPR repeat
XP_057805922.1 Pfam PF13041 PPR_2 Repeat 398 445 1.1e-60 202.3 PPR repeat family
XP_057805922.1 Pfam PF13812 PPR_3 Repeat 399 444 1.1e-23 83.8 Pentatricopeptide repeat domain
XP_057805922.1 Pfam PF01535 PPR Repeat 401 430 1.3e-64 210.8 PPR repeat
XP_057805922.1 Pfam PF01535 PPR Repeat 472 495 1.3e-64 210.8 PPR repeat
XP_057805922.1 Pfam PF20431 E_motif Repeat 518 578 3.1e-21 76.1 E motif
XP_057805923.1 Pfam PF13041 PPR_2 Repeat 63 110 1.1e-60 202.3 PPR repeat family
XP_057805923.1 Pfam PF01535 PPR Repeat 67 95 1.3e-64 210.8 PPR repeat
XP_057805923.1 Pfam PF13041 PPR_2 Repeat 165 212 1.1e-60 202.3 PPR repeat family
XP_057805923.1 Pfam PF01535 PPR Repeat 167 194 1.3e-64 210.8 PPR repeat
XP_057805923.1 Pfam PF01535 PPR Repeat 240 267 1.3e-64 210.8 PPR repeat
XP_057805923.1 Pfam PF01535 PPR Repeat 269 292 1.3e-64 210.8 PPR repeat
XP_057805923.1 Pfam PF12854 PPR_1 Repeat 297 325 6.4e-33 112.9 PPR repeat
XP_057805923.1 Pfam PF13041 PPR_2 Repeat 297 344 1.1e-60 202.3 PPR repeat family
XP_057805923.1 Pfam PF01535 PPR Repeat 299 329 1.3e-64 210.8 PPR repeat
XP_057805923.1 Pfam PF13812 PPR_3 Repeat 320 365 1.1e-23 83.8 Pentatricopeptide repeat domain
XP_057805923.1 Pfam PF01535 PPR Repeat 372 395 1.3e-64 210.8 PPR repeat
XP_057805923.1 Pfam PF13041 PPR_2 Repeat 398 445 1.1e-60 202.3 PPR repeat family
XP_057805923.1 Pfam PF13812 PPR_3 Repeat 399 444 1.1e-23 83.8 Pentatricopeptide repeat domain
XP_057805923.1 Pfam PF01535 PPR Repeat 401 430 1.3e-64 210.8 PPR repeat
XP_057805923.1 Pfam PF01535 PPR Repeat 472 495 1.3e-64 210.8 PPR repeat
XP_057805923.1 Pfam PF20431 E_motif Repeat 518 578 3.1e-21 76.1 E motif
XP_057805924.1 Pfam PF13041 PPR_2 Repeat 63 110 1.1e-60 202.3 PPR repeat family
XP_057805924.1 Pfam PF01535 PPR Repeat 67 95 1.3e-64 210.8 PPR repeat
XP_057805924.1 Pfam PF13041 PPR_2 Repeat 165 212 1.1e-60 202.3 PPR repeat family
XP_057805924.1 Pfam PF01535 PPR Repeat 167 194 1.3e-64 210.8 PPR repeat
XP_057805924.1 Pfam PF01535 PPR Repeat 240 267 1.3e-64 210.8 PPR repeat
XP_057805924.1 Pfam PF01535 PPR Repeat 269 292 1.3e-64 210.8 PPR repeat
XP_057805924.1 Pfam PF12854 PPR_1 Repeat 297 325 6.4e-33 112.9 PPR repeat
XP_057805924.1 Pfam PF13041 PPR_2 Repeat 297 344 1.1e-60 202.3 PPR repeat family
XP_057805924.1 Pfam PF01535 PPR Repeat 299 329 1.3e-64 210.8 PPR repeat
XP_057805924.1 Pfam PF13812 PPR_3 Repeat 320 365 1.1e-23 83.8 Pentatricopeptide repeat domain
XP_057805924.1 Pfam PF01535 PPR Repeat 372 395 1.3e-64 210.8 PPR repeat
XP_057805924.1 Pfam PF13041 PPR_2 Repeat 398 445 1.1e-60 202.3 PPR repeat family
XP_057805924.1 Pfam PF13812 PPR_3 Repeat 399 444 1.1e-23 83.8 Pentatricopeptide repeat domain
XP_057805924.1 Pfam PF01535 PPR Repeat 401 430 1.3e-64 210.8 PPR repeat
XP_057805924.1 Pfam PF01535 PPR Repeat 472 495 1.3e-64 210.8 PPR repeat
XP_057805924.1 Pfam PF20431 E_motif Repeat 518 578 3.1e-21 76.1 E motif

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

4 records

下载 cDNA FASTA
XM_057949940.1
TAGCTCTCGTCTCATCCGTGTATCTGCAAATCTTCTTTTCCGGCGAGACATTGCGACAGCCTATAGCTTCTGCTCAGCCACCGCCACCACTCTCCTCCGCCGCCCCATCACTTCTTCCTCCACTCTACATGCTCCCTCTAATCTAAAACCAGCAAAACAAGTCCTTCTCAAACAGCCATTCATCTCTCTCGCCCAAACAAAACCCAATTGAAATTGCAGGTTGCCCTAATCCCCTTTCCGGCGACCGCTGCTTCATTTCA...
XM_057949938.1
TAGCTCTCGTCTCATCCGTGTATCTGCAAATCTTCTTTTCCGGCGAGACATTGCGACAGCCTATAGCTTCTGCTCAGCCACCGCCACCACTCTCCTCCGCCGCCCCATCACTTCTTCCTCCACTCTACATGCTCCCTCTAATCTAAAACCAGCAAAACAAGTCCTTCTCAAACAGCCATTCATCTCTCTCGCCCAAACAAAACCCAATTGAAATTGCAGGTTGCCCTAATCCCCTTTCCGGCGACCGCTGCTTCATTTCA...

CDS

4 records

下载 CDS FASTA
LOC131020896
ATGCCAAAGAAAGCATGCATAGACCTCATAAAGAACTGCAAATCCATGGCTTGTTTCAAGCAGATCCAAGCTCACGTCTTCACCCATGGGCTCCACGACAGCATTGATGTCTTGCACAAGCTCATCGCATTCGCCGCCGTTGCCGACTTAAGCCATGCCGACAAGGTATTTTCCCAAATTGAGCGCCCAACTTTGTTTATCTATAATGTGATGATCAAGGCACATGTGAAATTCGGTAGTTGCAGAAAAGCCCTTTCCTT...
LOC131020896
ATGCCAAAGAAAGCATGCATAGACCTCATAAAGAACTGCAAATCCATGGCTTGTTTCAAGCAGATCCAAGCTCACGTCTTCACCCATGGGCTCCACGACAGCATTGATGTCTTGCACAAGCTCATCGCATTCGCCGCCGTTGCCGACTTAAGCCATGCCGACAAGGTATTTTCCCAAATTGAGCGCCCAACTTTGTTTATCTATAATGTGATGATCAAGGCACATGTGAAATTCGGTAGTTGCAGAAAAGCCCTTTCCTT...

Protein

4 records

下载 Protein FASTA
XP_057805921.1
MPKKACIDLIKNCKSMACFKQIQAHVFTHGLHDSIDVLHKLIAFAAVADLSHADKVFSQIERPTLFIYNVMIKAHVKFGSCRKALSLFDELRLKGMVPDNYTFPFVFKAVGKLRIVPEGEKIHGFALKSGDLYDCYVCNSVLDLYSELGCAKNLAKVFDEIPKRDLISWNVLISGFVKSSRFEDAVNVYRRMRQEASLQPDEATIVSTLSACTALKNLDLGREIHEYVSEKLGFTMIIGNALIDMYAKCGCLEIARGLFD...
XP_057805922.1
MPKKACIDLIKNCKSMACFKQIQAHVFTHGLHDSIDVLHKLIAFAAVADLSHADKVFSQIERPTLFIYNVMIKAHVKFGSCRKALSLFDELRLKGMVPDNYTFPFVFKAVGKLRIVPEGEKIHGFALKSGDLYDCYVCNSVLDLYSELGCAKNLAKVFDEIPKRDLISWNVLISGFVKSSRFEDAVNVYRRMRQEASLQPDEATIVSTLSACTALKNLDLGREIHEYVSEKLGFTMIIGNALIDMYAKCGCLEIARGLFD...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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