当前解析结果
SmilChr04G004038| 统一新 Gene ID | SmilChr04G004038 |
|---|---|
| 名称 | SmilChr04G004038 |
| 描述 | uncharacterized SmilChr04G004038 |
| 染色体 / SeqID | Chr04 / NC_080390.1 |
| 坐标与链方向 | 55608613 - 55610623 / - |
| NCBI Gene ID | LOC131020906 |
|---|---|
| GeneID | 131020906 |
| locus_tag | - |
| NCBI Name | LOC131020906 |
| 原始查询 | SmilChr04G004038 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | transmembrane protein, putative (DUF1279) [Source:NCBI gene (formerly Entrezgene);Acc:816628]; symbol=AT2G20940; hit=AT2G20940; species=arabidopsis; confidence=medium |
| 产物 | transmembrane protein, putative (DUF1279) [Source:NCBI gene (formerly Entrezgene);Acc:816628]; symbol=AT2G20940; hit=AT2G20940; species=arabidopsis; confidence=medium |
| Arabidopsis | AT2G20940 (AT2G20940)transmembrane protein, putative (DUF1279) [Source:NCBI gene (formerly Entrezgene);Acc:816628] identity=45; qcov=0.986; evalue=4.74e-38; confidence=medium |
| Rice | -- |
| GO | GO:0005739 (mitochondrion) |
| KEGG | - |
| Pfam | PF06916 (FAM210A-B_dom) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131020906 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Mitochondrion | 线粒体 | 1.00000 | XP_057805934.1 |
| 2 | Mitochondrion membrane | 线粒体膜 | 0.80000 | XP_057805935.1 |
| 3 | Nucleus | 细胞核 | 0.00000 | XP_057805934.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057805934.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057805934.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr4:55608848 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B135,B137,C50 |
Chr4:55608858 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B122,B71,B9 |
Chr4:55608864 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B117,B4,B97,C55 |
Chr4:55608867 |
C |
CTA |
2bp_insertion | frameshift_variant | 3 | B122,B71,B9 |
Chr4:55608867 |
C |
CTA |
2bp_insertion | CDS_variant | 3 | B122,B71,B9 |
Chr4:55608906 |
C |
CT |
1bp_insertion | frameshift_variant | 38 | A13,A14,A23,A25,A6,B1,B10,B100,B108,B115,B119,B125,B129,B139,B15,B2,B33,B34,B45,B51,B6,B69,B8,B85,C23,C26,C28,C3,C32,C48,C59,C65,C67,C68,C85,D4,D7,D9 |
Chr4:55608910 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B109,B111,B57,B97 |
Chr4:55608921 |
C |
CT |
1bp_insertion | frameshift_variant | 2 | C45,C58 |
Chr4:55608921 |
C |
CT |
1bp_insertion | CDS_variant | 2 | C45,C58 |
Chr4:55609037 |
C |
CT |
1bp_insertion | frameshift_variant | 28 | A11,A15,A16,A24,B107,B133,B22,B27,B36,B38,B39,B42,B43,B54,B63,B66,B72,B79,B81,B88,C14,C17,C18,C2,C34,C50,C59,C6 |
Chr4:55609048 |
T |
TA |
1bp_insertion | frameshift_variant | 18 | A23,A24,B13,B131,B140,B16,B23,B33,B34,B53,B82,B93,C24,C33,C46,C77,C81,D6 |
Chr4:55609981 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B40 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057805934.1PF06916
FAM210A-B_dom 4-131 aa
XP_057805935.1PF06916
FAM210A-B_dom 4-131 aa
XP_057805936.1PF06916
FAM210A-B_dom 4-131 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057805934.1 |
Pfam | PF06916 |
FAM210A-B_dom | Domain | 4 | 131 | 1.1e-23 | 84.2 | FAM210A/B-like domain |
XP_057805935.1 |
Pfam | PF06916 |
FAM210A-B_dom | Domain | 4 | 131 | 4.2e-24 | 85.6 | FAM210A/B-like domain |
XP_057805936.1 |
Pfam | PF06916 |
FAM210A-B_dom | Domain | 4 | 131 | 2.2e-24 | 86.4 | FAM210A/B-like domain |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
3 records
下载 cDNA FASTA3 records
下载 CDS FASTA3 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。