当前解析结果
SmilChr04G004055| 统一新 Gene ID | SmilChr04G004055 |
|---|---|
| 名称 | SmilChr04G004055 |
| 描述 | uncharacterized GPI-anchored protein At5g19250-like |
| 染色体 / SeqID | Chr04 / NC_080390.1 |
| 坐标与链方向 | 55707735 - 55713441 / - |
| NCBI Gene ID | LOC131020925 |
|---|---|
| GeneID | 131020925 |
| locus_tag | - |
| NCBI Name | LOC131020925 |
| 原始查询 | SmilChr04G004055 |
| 来源 | GFF basic annotation; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | Glycoprotein membrane GPI-anchored [Source:NCBI gene (formerly Entrezgene);Acc:832045]; symbol=AT5G19250; hit=AT5G19250; species=arabidopsis; confidence=high |
| 产物 | Glycoprotein membrane GPI-anchored [Source:NCBI gene (formerly Entrezgene);Acc:832045]; symbol=AT5G19250; hit=AT5G19250; species=arabidopsis; confidence=high |
| Arabidopsis | AT5G19250 (AT5G19250)Glycoprotein membrane GPI-anchored [Source:NCBI gene (formerly Entrezgene);Acc:832045] identity=72.4; qcov=0.736; evalue=1.18e-73; confidence=high |
| Rice | Os07g0645000 (OJ1458_B07.124)- identity=51; qcov=0.964; evalue=1.14e-63; confidence=high |
| GO | - |
| KEGG | - |
| Pfam | PF25884 (At5g19230) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131020925 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cell membrane | 细胞膜 | 1.00000 | XP_057805959.1 |
| 2 | Nucleus | 细胞核 | 0.00000 | XP_057805959.1 |
| 3 | Chromosome | 染色体 | 0.00000 | XP_057805959.1 |
| 4 | Centromere | 着丝粒 | 0.00000 | XP_057805959.1 |
| 5 | Chromatin | 染色质 | 0.00000 | XP_057805959.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr4:55707912 |
TC |
T |
1bp_deletion | frameshift_variant | 12 | B138,B19,B56,B79,B96,C16,C20,C21,C26,C73,C74,C80 |
Chr4:55708033 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B123,B129,B29,B37 |
Chr4:55708039 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B25,B61 |
Chr4:55708078 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | A20,B104,B19,B4 |
Chr4:55708360 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | A22,C38,C65 |
Chr4:55708388 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B102,D7 |
Chr4:55708422 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C35 |
Chr4:55713224 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | D10 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。
XP_057805959.1PF25884
At5g19230 26-152 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057805959.1 |
Pfam | PF25884 |
At5g19230 | Domain | 26 | 152 | 7.1e-59 | 197.8 | Uncharacterized GPI-anchored protein At5g19230-like domain |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。