Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr04G004065`

染色体: Chr04 坐标: 55778168-55779853 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr04G004065`
名称	SmilChr04G004065
描述	uncharacterized protein At5g19025-like
染色体 / SeqID	Chr04 / NC_080390.1
坐标与链方向	55778168 - 55779853 / `+`

ID 对照

NCBI Gene ID	`LOC131020936`
GeneID	`131020936`
locus_tag	`-`
NCBI Name	`LOC131020936`
原始查询	`SmilChr04G004065`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	Ribosomal protein L34e superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:819792]; symbol=AT3G06180; hit=AT3G06180; species=arabidopsis; confidence=high
产物	Ribosomal protein L34e superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:819792]; symbol=AT3G06180; hit=AT3G06180; species=arabidopsis; confidence=high
Arabidopsis	`AT3G06180` (AT3G06180) Ribosomal protein L34e superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:819792] identity=61.6; qcov=0.683; evalue=1.17e-61; confidence=high
Rice	`Os05g0393200` - identity=52.4; qcov=0.673; evalue=3.05e-35; confidence=medium
GO	-
KEGG	-
Pfam	PF28125 (At5g19025_N); PF30682 (At5g19025_C)
InterPro	-
eggNOG	-
NR	GeneID:131020936

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Endoplasmic reticulum	内质网	0.60000	`XP_057805969.1`
2	Nucleus	细胞核	0.20000	`XP_057805969.1`
3	Nucleus membrane	核膜	0.20000	`XP_057805969.1`
4	Endoplasmic reticulum membrane	内质网膜	0.20000	`XP_057805969.1`
5	Chromosome	染色体	0.00000	`XP_057805969.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr4:55778238`	`G`	`GA`	1bp_insertion	frameshift_variant	120	A13,A14,A2,A23,A4,B101,B103,B106,B109,B11,B111,B115,B121,B122,B123,B124,B131,B132,B133,B135,B137,B138,B15,B19,B20,B23,B24,B25,B28,B29,B3,B33,B37,B38,B39,B41,B42,B43,B45,B46,B49,B5,B50,B51,B52,B53,B55,B57,B58,B60,B62,B65,B67,B71,B73,B74,B75,B8,B81,B83,B84,B85,B86,B93,B94,B95,B97,B99,C1,C11,C12,C15,C16,C17,C20,C21,C22,C26,C27,C29,C31,C34,C35,C36,C38,C39,C4,C40,C41,C43,C44,C46,C48,C50,C51,C52,C56,C57,C58,C60,C61,C63,C64,C65,C66,C68,C69,C70,C71,C73,C8,C80,C82,C83,C84,C86,D10,D11,D4,D7
`Chr4:55778240`	`A`	`AT`	1bp_insertion	frameshift_variant	8	A21,B138,B140,B27,B35,B79,C33,D1
`Chr4:55778245`	`C`	`CAA`	2bp_insertion	frameshift_variant	44	A1,A15,B102,B109,B11,B112,B121,B123,B125,B130,B139,B14,B22,B27,B34,B44,B5,B70,B78,B90,B91,B92,B95,C11,C12,C13,C15,C26,C28,C30,C48,C49,C5,C51,C53,C56,C69,C7,C73,C76,C79,C87,D5,D8
`Chr4:55778279`	`CA`	`C`	1bp_deletion	frameshift_variant	48	A1,A15,B109,B110,B112,B113,B121,B125,B139,B22,B23,B27,B34,B44,B70,B71,B78,B82,B90,B91,B92,B95,C12,C15,C26,C27,C28,C3,C30,C33,C44,C45,C48,C5,C51,C53,C54,C56,C6,C65,C67,C7,C73,C79,C87,D3,D5,D9
`Chr4:55778303`	`GA`	`G`	1bp_deletion	frameshift_variant	2	A18,B55
`Chr4:55778303`	`GA`	`G`	1bp_deletion	CDS_variant	2	A18,B55
`Chr4:55778334`	`G`	`GCA`	2bp_insertion	frameshift_variant	7	A24,A3,B14,B32,B4,B46,B47
`Chr4:55778374`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B2,C4
`Chr4:55778461`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B26,B63
`Chr4:55778493`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B110,B71,B92,C45
`Chr4:55778568`	`T`	`TGC`	2bp_insertion	frameshift_variant	32	A21,A7,B10,B12,B121,B13,B17,B19,B26,B30,B47,B59,B67,B69,B86,C11,C19,C21,C24,C31,C42,C43,C48,C56,C59,C62,C71,C74,C78,C81,C83,D1
`Chr4:55778572`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	C38,C59,C63,C84

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057805969.1

290 aa

145

290

At5g19025_N

At5g19025_C

PF28125 At5g19025_N 111-180 aa PF30682 At5g19025_C 195-267 aa

XP_057805970.1

286 aa

143

286

At5g19025_N

At5g19025_C

PF28125 At5g19025_N 111-180 aa PF30682 At5g19025_C 195-267 aa

XP_057805971.1

278 aa

139

278

At5g19025_N

At5g19025_C

PF28125 At5g19025_N 111-180 aa PF30682 At5g19025_C 195-267 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057805969.1`	Pfam	`PF28125`	At5g19025_N	Domain	111	180	2.4e-16	61.0	At5g19025 N-terminal domain
`XP_057805969.1`	Pfam	`PF30682`	At5g19025_C	Domain	195	267	1.2e-34	118.5	At5g19025 C-terminal domain
`XP_057805970.1`	Pfam	`PF28125`	At5g19025_N	Domain	111	180	2.4e-16	61.0	At5g19025 N-terminal domain
`XP_057805970.1`	Pfam	`PF30682`	At5g19025_C	Domain	195	267	1.2e-34	118.5	At5g19025 C-terminal domain
`XP_057805971.1`	Pfam	`PF28125`	At5g19025_N	Domain	111	180	2.2e-16	61.1	At5g19025 N-terminal domain
`XP_057805971.1`	Pfam	`PF30682`	At5g19025_C	Domain	195	267	1.2e-34	118.5	At5g19025 C-terminal domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

3 records

下载 cDNA FASTA

XM_057949987.1
ACTCTTTTTGTATGTGTTTATATTGTAAACTCATATAATAAATTCATGTTTTTCATTTTAATTAAAAAGGGAAGCATCAAAATCCCACAAAAACAATTTTGCTGTATTAATCAAAATCAATTTCTCAGTCCCGCAGATGTTGTACTCCAGAGTACAAGCGGGCGAAGCACGCTAACCTGCGCTTCCCCTCGCCCCCACGCTAACCTGCGCGCCTCCCATTTTGCTCCACCTGAAATACCTTCGCCACCGCCGTCCACTAT...

XM_057949988.1
TCTTTTTGTATGTGTTTATATTGTAAACTCATATAATAAATTCATGTTTTTCATTTTAATTAAAAAGGGAAGCATCAAAATCCCACAAAAACAATTTTGCTGTATTAATCAAAATCAATTTCTCAGTCCCGCAGATGTTGTACTCCAGAGTACAAGCGGGCGAAGCACGCTAACCTGCGCTTCCCCTCGCCCCCACGCTAACCTGCGCGCCTCCCATTTTGCTCCACCTGAAATACCTTCGCCACCGCCGTCCACTATCA...

CDS

3 records

下载 CDS FASTA

LOC131020936
ATGTTTTTCATTTTAATTAAAAAGGGAAGCATCAAAATCCCACAAAAACAATTTTGCTGTATTAATCAAAATCAATTTCTCAGTCCCGCAGATGTTGTACTCCAGAGTACAAGCGGGCGAAGCACGCTAACCTGCGCTTCCCCTCGCCCCCACGCTAACCTGCGCGCCTCCCATTTTGCTCCACCTGAAATACCTTCGCCACCGCCGTCCACTATCATGCGCTCCTCCACCACCACCATCACAATGCGCCGCTCCGCCCC...

Protein

3 records

下载 Protein FASTA

XP_057805969.1
MFFILIKKGSIKIPQKQFCCINQNQFLSPADVVLQSTSGRSTLTCASPRPHANLRASHFAPPEIPSPPPSTIMRSSTTTITMRRSAPNALSPQPSISPNCPSLCRHSPSATLDLLILLLVLFSGAFLITSYFSYLFHSLSLLLPPLASDPQSQLIFLALFAASFLAFVSFFEICCGGRSRRCGRAGCRGLKRGMEFDLLLQGEELLRVGDGSKAVRDVNSLPWKGGGDDNPDYECLRAELRKMAPPNGRAVLLFCLRCGC...

XP_057805970.1
MFFILIKKGSIKIPQKQFCCINQNQFLSPADVVLQSTSGRSTLTCASPRPHANLRASHFAPPEIPSPPPSTIMRSSTTTITMRRSAPNALSPQPSISPNCPSLCRHSPSATLDLLILLLVLFSGAFLITSYFSYLFHSLSLLLPPLASDPQSQLIFLALFAASFLAFVSFFEICCGGRSRRCGRAGCRGLKRGMEFDLLLQGEELLRVGDGSKAVRDVNSLPWKGGGDDNPDYECLRAELRKMAPPNGRAVLLFCLRCGC...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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