Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr04G004066`

染色体: Chr04 坐标: 55779818-55783124 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr04G004066`
名称	SmilChr04G004066
描述	ribonucleoside-diphosphate reductase small chain A
染色体 / SeqID	Chr04 / NC_080390.1
坐标与链方向	55779818 - 55783124 / `-`

ID 对照

NCBI Gene ID	`LOC131020935`
GeneID	`131020935`
locus_tag	`-`
NCBI Name	`LOC131020935`
原始查询	`SmilChr04G004066`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	ribonucleoside-diphosphate reductase small chain A
产物	ribonucleoside-diphosphate reductase small chain A
Arabidopsis	`AT3G23580` (RNR2A) ribonucleotide reductase 2A [Source:NCBI gene (formerly Entrezgene);Acc:821937] identity=77.9; qcov=1; evalue=0; confidence=high
Rice	`Os06g0257450` (ST1) - identity=75.5; qcov=0.934; evalue=0; confidence=high
GO	GO:0009263 (deoxyribonucleotide biosynthetic process); GO:0016491 (oxidoreductase activity)
KEGG	smil00230 (Purine metabolism - Salvia miltiorrhiza (redroot sage)); smil00240 (Pyrimidine metabolism - Salvia miltiorrhiza (redroot sage)); smil00480 (Glutathione metabolism - Salvia miltiorrhiza (redroot sage)); smil01100 (Metabolic pathways - Salvia miltiorrhiza (redroot sage)); smil01232 (Nucleotide metabolism - Salvia miltiorrhiza (redroot sage))
Pfam	PF00268 (Ribonuc_red_sm)
InterPro	-
eggNOG	-
NR	GeneID:131020935

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cytoplasm	细胞质	1.00000	`XP_057805967.1`
2	Cytosol	细胞质基质	1.00000	`XP_057805967.1`
3	Nucleus	细胞核	0.80000	`XP_057805967.1`
4	Chromosome	染色体	0.00000	`XP_057805967.1`
5	Centromere	着丝粒	0.00000	`XP_057805967.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr4:55780052`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	B112,B75,B91,C30,D3
`Chr4:55780099`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B4
`Chr4:55780276`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	A21,B138,B140,B79
`Chr4:55780292`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	B22,B36,B63,C50,C87
`Chr4:55780700`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B25,B61,B78,C65
`Chr4:55781151`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B75
`Chr4:55781470`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B114
`Chr4:55781593`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B104
`Chr4:55782734`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B101

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057805967.1

349 aa

174

349

Ribonuc_red_sm

PF00268 Ribonuc_red_sm 36-302 aa

XP_057805968.1

349 aa

174

349

Ribonuc_red_sm

PF00268 Ribonuc_red_sm 36-302 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057805967.1`	Pfam	`PF00268`	Ribonuc_red_sm	Domain	36	302	7.6e-118	393.7	Ribonucleotide reductase, small chain
`XP_057805968.1`	Pfam	`PF00268`	Ribonuc_red_sm	Domain	36	302	7.6e-118	393.7	Ribonucleotide reductase, small chain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057949985.1
AATAACAAAATTAAAAAATTAGAACCCACAAAACTCCACAGGCCATGCAAGAAGACACGCACTCAATAAAAAAAACCTAAAAACGAAATCTTGGAGACAAAAAGGGGTTTTTTCCATCTTCCTCTATCACTCCCTCAAACAAAGAGAGATATAGATAAGAGAAACCTTTTCAGAAAAAAATGGGTTCTTTGAGAAATGAAGAAACAGAGGGAAAATTGTTTGAGCAGAAGAAAATTGAAGAAGATGAGGAAGATCAAGAA...

XM_057949984.1
CAAAACTCCACAGGCCATGCAAGAAGACACGCACTCAATAAAAAAAACCTAAAAACGAAATCTTGGAGACAAAAAGGGTATAATCTTTTCGATTTTCAATTGGAATATTTGGAAGCTACGGATTTTGTCGTTTTATTTGAGCTAAGGGTTTTTGTAGGGTTTTTTCCATCTTCCTCTATCACTCCCTCAAACAAAGAGAGATATAGATAAGAGAAACCTTTTCAGAAAAAAATGGGTTCTTTGAGAAATGAAGAAACAGA...

CDS

2 records

下载 CDS FASTA

LOC131020935
ATGGGTTCTTTGAGAAATGAAGAAACAGAGGGAAAATTGTTTGAGCAGAAGAAAATTGAAGAAGATGAGGAAGATCAAGAACCCATTTTGATGGAGCAACCGCAGCGGTTTTGCATGTTTCCTATCAAGTACCCACAAATTTGGGAGATGTACAAGAAGGCAGAAGCCAGTTTCTGGACTGCTGAGGAGGTTGATCTCTCACAGGATGTGCAGCAGTGGCAGGCTCTGTCTCGGCCCGAAAAGCACTTCATAAGCCATGT...

Protein

2 records

下载 Protein FASTA

XP_057805967.1
MGSLRNEETEGKLFEQKKIEEDEEDQEPILMEQPQRFCMFPIKYPQIWEMYKKAEASFWTAEEVDLSQDVQQWQALSRPEKHFISHVLAFFAASDGIVLENLAARFLNDVQIAEARAFYGFQTAMENIHSEMYSLLLETYIKDSKEKHRLFNAVENIPCVAQKAKWALNWIKSTSSFAERLVAFACVEGIFFSGSFCSIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLLYSLLRKQLSWQRVHLIVEEAVEIEIEFV...

XP_057805968.1
MGSLRNEETEGKLFEQKKIEEDEEDQEPILMEQPQRFCMFPIKYPQIWEMYKKAEASFWTAEEVDLSQDVQQWQALSRPEKHFISHVLAFFAASDGIVLENLAARFLNDVQIAEARAFYGFQTAMENIHSEMYSLLLETYIKDSKEKHRLFNAVENIPCVAQKAKWALNWIKSTSSFAERLVAFACVEGIFFSGSFCSIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLLYSLLRKQLSWQRVHLIVEEAVEIEIEFV...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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JBrowse

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