Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr04G004077`

染色体: Chr04 坐标: 55842116-55846248 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr04G004077`
名称	SmilChr04G004077
描述	probable 1-deoxy-D-xylulose-5-phosphate synthase, chloroplastic
染色体 / SeqID	Chr04 / NC_080390.1
坐标与链方向	55842116 - 55846248 / `+`

ID 对照

NCBI Gene ID	`LOC131020949`
GeneID	`131020949`
locus_tag	`-`
NCBI Name	`LOC131020949`
原始查询	`SmilChr04G004077`

查看完整 ID 对照表

文献序列与新 ID 证据

这些记录来自论文中明确给出的 accession，并通过序列比对映射到当前参考版本。网站定位属于计算预测；论文中的实验定位和互作单独列出。

论文基因名	Accession	当前 ID	比对	置信度	来源
`SmDXS5` CORE-032; 2022	`JN831118`	`LOC131020949` `SmilChr04G004077` GeneID 131020949	nucleotide CDS and protein BLAST against active nuclear reference, 2026-09-27; identity 98.737%; coverage 97.44%	Exact or near-exact sequence match	DOI

打开完整文献证据

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	probable 1-deoxy-D-xylulose-5-phosphate synthase, chloroplastic
产物	probable 1-deoxy-D-xylulose-5-phosphate synthase%2C chloroplastic
Arabidopsis	`AT4G15560` (CLA1) Deoxyxylulose-5-phosphate synthase [Source:NCBI gene (formerly Entrezgene);Acc:827230] identity=80.7; qcov=0.961; evalue=0; confidence=high
Rice	`Os05g0408900` (CLA1) - identity=82.3; qcov=0.95; evalue=0; confidence=high
GO	GO:0008661 (1-deoxy-D-xylulose-5-phosphate synthase activity); GO:0009507 (chloroplast); GO:0015995 (chlorophyll biosynthetic process); GO:0016114 (terpenoid biosynthetic process)
KEGG	smil00730 (Thiamine metabolism - Salvia miltiorrhiza (redroot sage)); smil00900 (Terpenoid backbone biosynthesis - Salvia miltiorrhiza (redroot sage)); smil01100 (Metabolic pathways - Salvia miltiorrhiza (redroot sage)); smil01110 (Biosynthesis of secondary metabolites - Salvia miltiorrhiza (redroot sage))
Pfam	PF00676 (E1_dh); PF02779 (Transket_pyr); PF02780 (Transketolase_C); PF13292 (DXP_synthase_N)
InterPro	-
eggNOG	-
NR	GeneID:131020949

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Mitochondrion	线粒体	0.80000	`XP_057805983.1`
2	Mitochondrion matrix	线粒体基质	0.60000	`XP_057805983.1`
3	Cytosol	细胞质基质	0.20000	`XP_057805983.1`
4	Chloroplast	叶绿体	0.20000	`XP_057805983.1`
5	Nucleus	细胞核	0.00000	`XP_057805983.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr4:55842820`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B73,B83
`Chr4:55842823`	`C`	`T`	EMS_canonical_SNV	stop_gained	23	A2,A7,A9,B104,B25,B4,B49,B55,B66,B76,B80,B84,B93,B94,C10,C29,C52,C60,C61,C70,C78,C86,D6
`Chr4:55842856`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B28
`Chr4:55843051`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C60
`Chr4:55843059`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B28
`Chr4:55843080`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	A20,B115,B18,B26,C21
`Chr4:55843086`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B136,B77
`Chr4:55843180`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	D10
`Chr4:55843272`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C40
`Chr4:55843290`	`C`	`T`	EMS_canonical_SNV	stop_gained	3	B40,C42,D7
`Chr4:55843290`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B40,C42,D7
`Chr4:55843323`	`G`	`GAT`	2bp_insertion	frameshift_variant	3	A19,B45,C15

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057805983.1

685 aa

342

685

DXP_synthase_N

E1_dh

Transket_pyr

Transketolase_C

PF13292 DXP_synthase_N 47-323 aa PF00676 E1_dh 158-218 aa PF02779 Transket_pyr 360-521 aa PF02780 Transketolase_C 539-660 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057805983.1`	Pfam	`PF13292`	DXP_synthase_N	Family	47	323	6.3e-104	347.8	1-deoxy-D-xylulose-5-phosphate synthase
`XP_057805983.1`	Pfam	`PF00676`	E1_dh	Domain	158	218	2.3e-05	24.3	Dehydrogenase E1 component
`XP_057805983.1`	Pfam	`PF02779`	Transket_pyr	Domain	360	521	2.1e-50	171.5	Transketolase, pyrimidine binding domain
`XP_057805983.1`	Pfam	`PF02780`	Transketolase_C	Domain	539	660	5.5e-29	101.3	Transketolase, C-terminal domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA

XM_057950000.1
CCTTGAAATTTAATGCCCTCTCTCTCTCTCTCTCTCTCACACACACACACACACACAGAGTTGCCAGCATCCAGTGGGATTTCCTTCTAAGGTCTAAATGAAAGTAATCCAATATCAGATTTTGTGCATTGGAACTGAGAAATCAGTGATGAAACACATTTTTGTGTGTGATTGGATAATAAAGTTGCAATCTTTTTAAGAAAGTAGAGAGAGTTGATATCCATAATCCATAACCCATAATCCATAATCTTTGTTAAGCT...

CDS

1 records

下载 CDS FASTA

LOC131020949
ATGCTCACAGCAACAGGCTGCATGGGGTGGATCAACAGTGTCACTTTTCTTTCAAGGCAAAGAGAAGTTCAAGTGGGATTTGTGCATCATCTTCAAAAAGAGGGGAATATTTCTCAGGATAAGCCTCCAACTCCTCTTTTGGACTCTATCAACTATCCAAACCACATGAAAAATCTCTCACTAAAGGAGCTGCAGCAACTCGCGGATGAGCTGAGGTCCGATCTTATTTTCAATGTGTCGAAAACGGGGGGCCACCTTGG...

Protein

1 records

下载 Protein FASTA

XP_057805983.1
MLTATGCMGWINSVTFLSRQREVQVGFVHHLQKEGNISQDKPPTPLLDSINYPNHMKNLSLKELQQLADELRSDLIFNVSKTGGHLGSGLGVIELTVALHYVFEAPQDRILWDVGHQSYPHKILTGRRDRMPTLRQTDGLSGFTKRSESDYDCFGAGHSSTTISAGLGMAVGRDLKGRKNHVVAVIGDGAMTAGQAYEAMNNAGYLDSDMIVILNDNKQVSLPTTTLDGPSPPVGALSRALSRLQSNRPLRELGEASKGG...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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JBrowse

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