Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr04G004084`

染色体: Chr04 坐标: 55880427-55885721 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr04G004084`
名称	SmilChr04G004084
描述	sodium/hydrogen exchanger 2-like
染色体 / SeqID	Chr04 / NC_080390.1
坐标与链方向	55880427 - 55885721 / `-`

ID 对照

NCBI Gene ID	`LOC131020956`
GeneID	`131020956`
locus_tag	`-`
NCBI Name	`LOC131020956`
原始查询	`SmilChr04G004084`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	sodium/hydrogen exchanger 2-like
产物	sodium/hydrogen exchanger 2-like
Arabidopsis	`AT3G05030` (NHX2) sodium hydrogen exchanger 2 [Source:NCBI gene (formerly Entrezgene);Acc:819665] identity=74.5; qcov=0.982; evalue=0; confidence=high
Rice	`Os07g0666900` (NHX1) - identity=74.1; qcov=0.959; evalue=0; confidence=high
GO	GO:0006814 (sodium ion transport); GO:0006885 (regulation of pH); GO:0015385 (sodium:proton antiporter activity); GO:0016020 (membrane); GO:1902600 (proton transmembrane transport)
KEGG	-
Pfam	PF00999 (Na_H_Exchanger)
InterPro	-
eggNOG	-
NR	GeneID:131020956

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Vacuole	液泡	1.00000	`XP_057805993.1`
2	Vacuole membrane	液泡膜	1.00000	`XP_057805993.1`
3	Nucleus	细胞核	0.00000	`XP_057805993.1`
4	Chromosome	染色体	0.00000	`XP_057805993.1`
5	Centromere	着丝粒	0.00000	`XP_057805993.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr4:55880812`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	D11
`Chr4:55880875`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	B135,B78,C28,D5,D8
`Chr4:55881004`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	B16,B2,B55,C39,C75
`Chr4:55881109`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B123,B14,B77
`Chr4:55882053`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B50,C34
`Chr4:55882770`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B49
`Chr4:55884082`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B108,C81

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057805993.1

556 aa

278

556

Na_H_Exchanger

PF00999 Na_H_Exchanger 34-441 aa

XP_057805994.1

556 aa

278

556

Na_H_Exchanger

PF00999 Na_H_Exchanger 34-441 aa

XP_057805995.1

556 aa

278

556

Na_H_Exchanger

PF00999 Na_H_Exchanger 34-441 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057805993.1`	Pfam	`PF00999`	Na_H_Exchanger	Domain	34	441	2e-54	185.6	Sodium/hydrogen exchanger, transmembrane
`XP_057805994.1`	Pfam	`PF00999`	Na_H_Exchanger	Domain	34	441	2e-54	185.6	Sodium/hydrogen exchanger, transmembrane
`XP_057805995.1`	Pfam	`PF00999`	Na_H_Exchanger	Domain	34	441	2e-54	185.6	Sodium/hydrogen exchanger, transmembrane

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

3 records

下载 cDNA FASTA

XM_057950012.1
AAACGGACTCTCTATTAGCCCGTCGATTTTCCCTCTATTTCACACACAACACATACTTCCACAATTTTCTGCGTAGATTTTTTTTCCTTTTCGTTTCCGATTTAAGAGTGATCAATGTAGAGAAGATATTTGGAACTTTTTCAAAGATGCGTCAAAATCCGTGATATTGTATAGGAGCTCTTCTGGAATCTTCAATTTCCTCGCTGTATTTGAAGGAGAAGAAAGGCTGAGTTTCGCAGCTAGAAGTTTCTCGATTCTGT...

XM_057950011.1
AACGGACTCTCTATTAGCCCGTCGATTTTCCCTCTATTTCACACACAACACATACTTCCACAATTTTCTGCGTAGATTTTTTTTCCTTTTCGTTTCCGATTTAAGAGTGATCAATGTAGAGAAGATATTTGGAACTTTTTCAAAGATGCGTCAAAATCCGTGATATTGTATAGGAGCTCTTCTGGAATCTTCAATTTCCTCGCTGTATTTGAAGGAGAAGAAAGGCTGAGTTTCGCAGCTAGAAGTTTCTCGATTCTGTT...

CDS

3 records

下载 CDS FASTA

LOC131020956
ATGGGGATTGATTTGAGATCTGTGTTGGAGACGGTGAGAAATTTGTCAACCTCTGACCATGCTTCAGTGGTCTCAATCACCTTGTTTGTCACGCTCCTCTGTGCGTGTATTGTGATCGGTCATCTATTGGAGGAAAGTCCTTGGATGAATGAATCAATCACTGCCCTTATAATTGGTGTGGGGACCGGAGTTATGATTTTACTTGTAAGTGGAGGGAAAAGCTCACATCTTTTTGTGTTCAGCGAAGATCTTTTCTTCAT...

Protein

3 records

下载 Protein FASTA

XP_057805993.1
MGIDLRSVLETVRNLSTSDHASVVSITLFVTLLCACIVIGHLLEESPWMNESITALIIGVGTGVMILLVSGGKSSHLFVFSEDLFFIYLLPPIIFNAGFQVKKKQFFRNFATIMMFGALGTLVSFTIISLGAIAIFGKMDLGLVIGDYLAIGAIFAATDSVCTLQVLCQDETPLLYSLVFGEGVVNDATSVVLFNAIQDFDLSRINSAIALQLIGNFIYLFISSTVLGVFLGLLSAYIIKKLYFGRHSTDREVAIMMLMA...

XP_057805994.1
MGIDLRSVLETVRNLSTSDHASVVSITLFVTLLCACIVIGHLLEESPWMNESITALIIGVGTGVMILLVSGGKSSHLFVFSEDLFFIYLLPPIIFNAGFQVKKKQFFRNFATIMMFGALGTLVSFTIISLGAIAIFGKMDLGLVIGDYLAIGAIFAATDSVCTLQVLCQDETPLLYSLVFGEGVVNDATSVVLFNAIQDFDLSRINSAIALQLIGNFIYLFISSTVLGVFLGLLSAYIIKKLYFGRHSTDREVAIMMLMA...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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JBrowse

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