Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr04G004106`

染色体: Chr04 坐标: 56016397-56019334 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr04G004106`
名称	SmilChr04G004106
描述	mitochondrial thiamine diphosphate carrier 2-like
染色体 / SeqID	Chr04 / NC_080390.1
坐标与链方向	56016397 - 56019334 / `-`

ID 对照

NCBI Gene ID	`LOC131020981`
GeneID	`131020981`
locus_tag	`-`
NCBI Name	`LOC131020981`
原始查询	`SmilChr04G004106`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	mitochondrial thiamine diphosphate carrier 2-like
产物	mitochondrial thiamine diphosphate carrier 2-like
Arabidopsis	`AT5G48970` (AT5G48970) Mitochondrial substrate carrier family protein [Source:NCBI gene (formerly Entrezgene);Acc:834956] identity=72.1; qcov=1; evalue=5.72e-177; confidence=high
Rice	`Os01g0934200` - identity=68.4; qcov=1; evalue=2.11e-172; confidence=high
GO	GO:0005743 (mitochondrial inner membrane); GO:0015234 (thiamine transmembrane transporter activity); GO:0030974 (thiamine pyrophosphate transmembrane transport)
KEGG	-
Pfam	PF00153 (Mito_carr)
InterPro	-
eggNOG	-
NR	GeneID:131020981

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Mitochondrion	线粒体	1.00000	`XP_057806029.1`
2	Mitochondrion membrane	线粒体膜	1.00000	`XP_057806029.1`
3	Mitochondrion inner membrane	线粒体内膜	1.00000	`XP_057806029.1`
4	Nucleus	细胞核	0.00000	`XP_057806029.1`
5	Chromosome	染色体	0.00000	`XP_057806029.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr4:56016597`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	D10
`Chr4:56016636`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B25,B61
`Chr4:56016646`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	A10,B27,B59,D1
`Chr4:56016665`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B9,C20,C72
`Chr4:56016682`	`GCA`	`G`	2bp_deletion	frameshift_variant	19	A24,A4,A9,B13,B136,B16,B38,B39,B44,B49,B57,B78,B88,C2,C48,C6,C64,C66,D11
`Chr4:56016685`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	A7,B52,B80
`Chr4:56016718`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B129,B46
`Chr4:56016720`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B129,B46
`Chr4:56016793`	`CGT`	`C`	2bp_deletion	frameshift_variant	28	A18,A21,B112,B135,B136,B19,B35,B5,B50,B56,B68,B72,B84,B96,C10,C20,C22,C24,C26,C29,C3,C36,C4,C48,C53,C56,C86,D6
`Chr4:56016796`	`AAG`	`A`	2bp_deletion	frameshift_variant	28	A18,A21,B112,B135,B136,B19,B35,B5,B50,B56,B68,B72,B84,B96,C10,C20,C22,C24,C26,C29,C3,C36,C4,C48,C53,C56,C86,D6
`Chr4:56016905`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C8
`Chr4:56016938`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B25,B61

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057806029.1

338 aa

169

338

Mito_carr

PF00153 Mito_carr 11-111 aa PF00153 Mito_carr 122-208 aa PF00153 Mito_carr 231-264 aa

XP_057806030.1

326 aa

163

326

Mito_carr

PF00153 Mito_carr 11-111 aa PF00153 Mito_carr 122-208 aa PF00153 Mito_carr 231-325 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057806029.1`	Pfam	`PF00153`	Mito_carr	Repeat	11	111	1.9e-56	188.5	Mitochondrial carrier protein
`XP_057806029.1`	Pfam	`PF00153`	Mito_carr	Repeat	122	208	1.9e-56	188.5	Mitochondrial carrier protein
`XP_057806029.1`	Pfam	`PF00153`	Mito_carr	Repeat	231	264	1.9e-56	188.5	Mitochondrial carrier protein
`XP_057806030.1`	Pfam	`PF00153`	Mito_carr	Repeat	11	111	2.7e-72	239.3	Mitochondrial carrier protein
`XP_057806030.1`	Pfam	`PF00153`	Mito_carr	Repeat	122	208	2.7e-72	239.3	Mitochondrial carrier protein
`XP_057806030.1`	Pfam	`PF00153`	Mito_carr	Repeat	231	325	2.7e-72	239.3	Mitochondrial carrier protein

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057950047.1
TGCTATTATTTGTGCATATATTTTGTCACAACCAATCAATGATTCGCATGTGCTTCTCTACAATTCAACCAAACCAAAACCCGTTGCCTCTCTCTCTCACACACACACACACACGACCAAAGAGGCAAAAGCCCAACACAAGTTTATGACACAAAGATCCCCTGAGCTACCGAAATTCAATGGAACTTTTTGTTGTGTGTTGAAGAAGGAGGAATGGGAGAGGCAGGGCAGATAAAGAGGGCTTTGATTGATGCCACCGC...

XM_057950046.1
TGCTATTATTTGTGCATATATTTTGTCACAACCAATCAATGATTCGCATGTGCTTCTCTACAATTCAACCAAACCAAAACCCGTTGCCTCTCTCTCTCACACACACACACACACGACCAAAGAGGCAAAAGCCCAACACAAGTTTATGACACAAAGATCCCCTGAGCTACCGAAATTCAATGGAACTTTTTGTTGTGTGTTGAAGAAGGAGGAATGGGAGAGGCAGGGCAGATAAAGAGGGCTTTGATTGATGCCACCGC...

CDS

2 records

下载 CDS FASTA

LOC131020981
ATGGGAGAGGCAGGGCAGATAAAGAGGGCTTTGATTGATGCCACCGCCGGCGCGATTTCTGGTGCTGTTGCCAGGACTGTGACATCCCCTCTTGATGTAATCAAGATTAGGTTTCAGGTTCAGCTGGAACCAACTACGCAGTGGGCTTTGCTTCGTAGAGATGTGTATGGTCCGTCAAAGTATACCGGTATGCTGCAAGCAACGAAAGACATCTTTCGGGAAGAAGGATTTTTGGGCTTCTGGAGGGGCAACGTTCCGGC...

Protein

2 records

下载 Protein FASTA

XP_057806029.1
MGEAGQIKRALIDATAGAISGAVARTVTSPLDVIKIRFQVQLEPTTQWALLRRDVYGPSKYTGMLQATKDIFREEGFLGFWRGNVPALLMVMPYTAIQFVVMQKLKALISGSSNPENHLRISPYLSYVSGSVSGCAATIGSYPFDLLRTILASQGEPKVYPNMRSALSNILETRGLRGLYAGLAPTLVEIVPYAGLQFGTYDTFKRWTMAWNRSTSRYPGRENDVLTDVEVSVCGLAAGICAKAVCHPLDVVKKRFQVRR...

XP_057806030.1
MGEAGQIKRALIDATAGAISGAVARTVTSPLDVIKIRFQVQLEPTTQWALLRRDVYGPSKYTGMLQATKDIFREEGFLGFWRGNVPALLMVMPYTAIQFVVMQKLKALISGSSNPENHLRISPYLSYVSGSVSGCAATIGSYPFDLLRTILASQGEPKVYPNMRSALSNILETRGLRGLYAGLAPTLVEIVPYAGLQFGTYDTFKRWTMAWNRSTSRYPGRENDVLTDVEVSVCGLAAGICAKAVCHPLDVVKKRFQVQG...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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