当前解析结果
SmilChr04G004108| 统一新 Gene ID | SmilChr04G004108 |
|---|---|
| 名称 | SmilChr04G004108 |
| 描述 | uncharacterized SmilChr04G004108 |
| 染色体 / SeqID | Chr04 / NC_080390.1 |
| 坐标与链方向 | 56029042 - 56031671 / - |
| NCBI Gene ID | LOC131020984 |
|---|---|
| GeneID | 131020984 |
| locus_tag | - |
| NCBI Name | LOC131020984 |
| 原始查询 | SmilChr04G004108 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | threonyl and alanyl tRNA synthetase second additional domain-containing protein [Source:NCBI gene (formerly Entrezgene);Acc:820906]; symbol=AT3G16565; hit=AT3G16565; species=arabidopsis; confidence=high |
| 产物 | threonyl and alanyl tRNA synthetase second additional domain-containing protein [Source:NCBI gene (formerly Entrezgene);Acc:820906]; symbol=AT3G16565; hit=AT3G16565; species=arabidopsis; confidence=high |
| Arabidopsis | AT3G16565 (AT3G16565)threonyl and alanyl tRNA synthetase second additional domain-containing protein [Source:NCBI gene (formerly Entrezgene);Acc:820906] identity=64.2; qcov=1.01; evalue=5.34e-116; confidence=high |
| Rice | Os01g0120400- identity=58.7; qcov=1.01; evalue=1.05e-109; confidence=high |
| GO | GO:0002196 (Ser-tRNA(Ala) deacylase activity); GO:0004813 (alanine-tRNA ligase activity); GO:0005524 (ATP binding); GO:0006419 (alanyl-tRNA aminoacylation); GO:0006450 (regulation of translational fidelity) |
| KEGG | - |
| Pfam | PF01411 (tRNA-synt_2c) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131020984 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Nucleus | 细胞核 | 1.00000 | XP_057806035.1 |
| 2 | Cytoplasm | 细胞质 | 1.00000 | XP_057806035.1 |
| 3 | Chromosome | 染色体 | 0.00000 | XP_057806035.1 |
| 4 | Centromere | 着丝粒 | 0.00000 | XP_057806035.1 |
| 5 | Chromatin | 染色质 | 0.00000 | XP_057806035.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr4:56029512 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | B119,B2,B75,C25,C6 |
Chr4:56029528 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | B32,C14,C32,C42,C80 |
Chr4:56029530 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B119,C25 |
Chr4:56029532 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B71,C53 |
Chr4:56029540 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B119 |
Chr4:56029555 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B55,C78 |
Chr4:56029842 |
G |
GA |
1bp_insertion | frameshift_variant | 5 | A23,B125,B91,C42,C55 |
Chr4:56029842 |
G |
GA |
1bp_insertion | CDS_variant | 5 | A23,B125,B91,C42,C55 |
Chr4:56029844 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | A23,B125,B91,C42,C55 |
Chr4:56029955 |
TC |
T |
1bp_deletion | frameshift_variant | 89 | A15,A18,A19,A21,A22,A23,A24,A7,B102,B103,B104,B107,B112,B114,B117,B119,B121,B124,B128,B132,B135,B136,B15,B2,B21,B23,B26,B28,B3,B33,B35,B42,B43,B45,B5,B54,B55,B59,B60,B61,B64,B67,B69,B7,B71,B72,B73,B74,B76,B78,B84,B85,C10,C12,C15,C23,C24,C25,C29,C3,C30,C32,C35,C37,C45,C53,C54,C56,C59,C60,C61,C62,C68,C71,C72,C75,C79,C8,C80,C82,C83,C84,C85,C86,D11,D3,D5,D8,D9 |
Chr4:56029958 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | A10,B128 |
Chr4:56030003 |
G |
A |
EMS_canonical_SNV | stop_gained | 17 | A11,A19,A25,B123,B14,B48,B54,B60,B73,B81,B83,B86,C33,C4,C42,C64,C66 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057806035.1PF01411
tRNA-synt_2c 34-106 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057806035.1 |
Pfam | PF01411 |
tRNA-synt_2c | Family | 34 | 106 | 2.8e-11 | 43.4 | tRNA synthetases class II (A) |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。