Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr04G004124`

染色体: Chr04 坐标: 56091060-56096415 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr04G004124`
名称	SmilChr04G004124
描述	probable acyl-CoA dehydrogenase IBR3
染色体 / SeqID	Chr04 / NC_080390.1
坐标与链方向	56091060 - 56096415 / `-`

ID 对照

NCBI Gene ID	`LOC131020999`
GeneID	`131020999`
locus_tag	`-`
NCBI Name	`LOC131020999`
原始查询	`SmilChr04G004124`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	probable acyl-CoA dehydrogenase IBR3
产物	probable acyl-CoA dehydrogenase IBR3
Arabidopsis	`AT3G06810` (IBR3) acyl-CoA dehydrogenase-like protein [Source:NCBI gene (formerly Entrezgene);Acc:819865] identity=72.8; qcov=1; evalue=0; confidence=high
Rice	`Os07g0675000` (P0037D09.22-1) - identity=69.6; qcov=1; evalue=0; confidence=high
GO	GO:0016627 (oxidoreductase activity, acting on the CH-CH group of donors); GO:0050660 (flavin adenine dinucleotide binding)
KEGG	smil00071 (Fatty acid degradation - Salvia miltiorrhiza (redroot sage)); smil00280 (Valine, leucine and isoleucine degradation - Salvia miltiorrhiza (redroot sage)); smil01100 (Metabolic pathways - Salvia miltiorrhiza (redroot sage)); smil01110 (Biosynthesis of secondary metabolites - Salvia miltiorrhiza (redroot sage)); smil01212 (Fatty acid metabolism - Salvia miltiorrhiza (redroot sage))
Pfam	PF00441 (Acyl-CoA_dh_1); PF01636 (APH); PF02770 (Acyl-CoA_dh_M); PF08028 (Acyl-CoA_dh_2)
InterPro	-
eggNOG	-
NR	GeneID:131020999

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cytosol	细胞质基质	1.00000	`XP_057806052.1`
2	Peroxisome	过氧化物酶体	0.80000	`XP_057806052.1`
3	Cytoplasm	细胞质	0.20000	`XP_057806052.1`
4	Nucleus	细胞核	0.00000	`XP_057806052.1`
5	Chromosome	染色体	0.00000	`XP_057806052.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr4:56091211`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B23,B51
`Chr4:56091230`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B100
`Chr4:56091287`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B40,B71,C42,C78
`Chr4:56091295`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B114
`Chr4:56091315`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B40,C42,C78
`Chr4:56091320`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	A21,B35
`Chr4:56091346`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	A21,B35
`Chr4:56091356`	`G`	`A`	EMS_canonical_SNV	stop_gained	76	A10,A16,A19,A22,A23,A24,A4,A6,A9,B105,B106,B108,B111,B120,B125,B128,B133,B134,B137,B140,B18,B21,B25,B27,B28,B34,B38,B39,B41,B47,B48,B50,B56,B57,B58,B59,B60,B61,B62,B70,B71,B72,B73,B87,B88,B93,B96,B98,C12,C14,C16,C2,C20,C22,C23,C24,C25,C28,C36,C45,C48,C53,C55,C61,C65,C71,C78,C8,C80,C83,C86,D1,D2,D7,D8,D9
`Chr4:56091361`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C14
`Chr4:56091362`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	A21,B35
`Chr4:56091530`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B120
`Chr4:56091544`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C8

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057806052.1

830 aa

415

830

APH

Acyl-CoA_dh_M

Acyl-CoA_dh_1

Acyl-CoA_dh_2

PF01636 APH 42-274 aa PF02770 Acyl-CoA_dh_M 561-662 aa PF00441 Acyl-CoA_dh_1 674-822 aa PF08028 Acyl-CoA_dh_2 690-804 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057806052.1`	Pfam	`PF01636`	APH	Domain	42	274	7.3e-50	170.7	Phosphotransferase enzyme family
`XP_057806052.1`	Pfam	`PF02770`	Acyl-CoA_dh_M	Domain	561	662	2.6e-19	69.9	Acyl-CoA dehydrogenase, middle domain
`XP_057806052.1`	Pfam	`PF00441`	Acyl-CoA_dh_1	Domain	674	822	1.6e-35	123.2	Acyl-CoA dehydrogenase, C-terminal domain
`XP_057806052.1`	Pfam	`PF08028`	Acyl-CoA_dh_2	Domain	690	804	1.4e-06	29.4	Acyl-CoA dehydrogenase, C-terminal domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA

XM_057950069.1
CTTCCACTACCACGGTTGATAAATTAAACAAAAAATAGTAGTAATAAATTCGACATTATCCAGTGTTCATCACTTTTTGACGAAGTATTGTCTGCGACGCAATTCGGCCGAAAAGCATTGGCATTTCCGAACTAAAAACAAACTTTTAGGACAATGGGAAAGGTGGAAAAGATTGTTTCTTTATAATCCAATTCTTGAAAATCACCGAAACCCAATCTTTTTTTTCCCCTCTCTTTGGAGTTGTTTTTCAAGAATTGAGA...

CDS

1 records

下载 CDS FASTA

LOC131020999
ATGGCGACCCGGACGTCTGAACTCGTGGGTCGGGTCGACCCGGCTCAGAGCTTCGACGTTGATGCTCTGCTCCGTTACGCGATCGCGAATGTTGATGGGTTTCCTCAGCGCCATTCACAGTTCACTGTTTCTCAGTTTGGGCATGGTCAATCGAATCCAACGTTCCTCCTGGAAGTTCACAGCGGAGATTTGAAGAAGCGATATGTGTTGAGAAAGAAACCCCCGGGAAAATTACTTGAATCCGCACATGCTGTTGAGAG...

Protein

1 records

下载 Protein FASTA

XP_057806052.1
MATRTSELVGRVDPAQSFDVDALLRYAIANVDGFPQRHSQFTVSQFGHGQSNPTFLLEVHSGDLKKRYVLRKKPPGKLLESAHAVEREFQVLHALGTHSLVPVPKVYCLCTDPSVIGTTFYIMEYLEGRIFIEPMLPVVEPRQRRAIYHATAKALASLHSTDVDAIGLRSYGKPNNYCKRQVERWARQYLVSTGEGKSNRNPRMLELADWLRQHIPPEDSSGEAAGLVHGDFRIDNLVFHPTEDRVIGILDWELSTLGNQ...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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JBrowse

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