当前解析结果
SmilChr04G004159| 统一新 Gene ID | SmilChr04G004159 |
|---|---|
| 名称 | SmilChr04G004159 |
| 描述 | pentatricopeptide repeat-containing protein At2g36240-like |
| 染色体 / SeqID | Chr04 / NC_080390.1 |
| 坐标与链方向 | 56274660 - 56278615 / + |
| NCBI Gene ID | LOC131021039 |
|---|---|
| GeneID | 131021039 |
| locus_tag | - |
| NCBI Name | LOC131021039 |
| 原始查询 | SmilChr04G004159 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | pentatricopeptide repeat-containing protein At2g36240-like |
| 产物 | pentatricopeptide repeat-containing protein At2g36240-like |
| Arabidopsis | AT2G36240 (AT2G36240)pentatricopeptide (PPR) repeat-containing protein [Source:NCBI gene (formerly Entrezgene);Acc:818196] identity=54.6; qcov=0.946; evalue=3.3e-179; confidence=high |
| Rice | Os01g0908800 (P0497A05.20)- identity=40.5; qcov=0.869; evalue=7.38e-94; confidence=medium |
| GO | GO:0005515 (protein binding) |
| KEGG | - |
| Pfam | PF01535 (PPR); PF12854 (PPR_1); PF13041 (PPR_2); PF13812 (PPR_3) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131021039 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Mitochondrion | 线粒体 | 1.00000 | XP_057806101.1 |
| 2 | Nucleus | 细胞核 | 0.00000 | XP_057806101.1 |
| 3 | Chromosome | 染色体 | 0.00000 | XP_057806101.1 |
| 4 | Centromere | 着丝粒 | 0.00000 | XP_057806101.1 |
| 5 | Chromatin | 染色质 | 0.00000 | XP_057806101.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr4:56274935 |
C |
CCG |
2bp_insertion | frameshift_variant | 1 | C76 |
Chr4:56274935 |
C |
CCG |
2bp_insertion | CDS_variant | 1 | C76 |
Chr4:56274949 |
AC |
A |
1bp_deletion | frameshift_variant | 1 | B33 |
Chr4:56274949 |
AC |
A |
1bp_deletion | CDS_variant | 1 | B33 |
Chr4:56275084 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | B111,B26,B63,C23,C75 |
Chr4:56275164 |
A |
ACT |
2bp_insertion | frameshift_variant | 31 | A20,A6,B111,B115,B122,B131,B135,B23,B26,B48,B53,B63,B67,B76,B87,B91,B98,C16,C18,C23,C25,C32,C40,C48,C49,C60,C62,C68,C71,C75,C83 |
Chr4:56275165 |
CT |
C |
1bp_deletion | frameshift_variant | 55 | A1,A16,A18,A2,A22,A6,B1,B106,B108,B112,B119,B120,B126,B128,B130,B133,B137,B139,B17,B25,B29,B30,B37,B40,B42,B43,B47,B50,B58,B61,B64,B69,B7,B73,B77,B78,B8,B80,B93,C10,C13,C17,C23,C24,C28,C36,C37,C60,C75,C77,C82,C86,D6,D7,D8 |
Chr4:56275236 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | A6 |
Chr4:56275310 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C37 |
Chr4:56275363 |
TA |
T |
1bp_deletion | frameshift_variant | 31 | A1,A18,A2,B1,B103,B119,B120,B124,B128,B133,B137,B17,B29,B32,B40,B46,B47,B6,B64,B7,B78,B88,B94,C13,C21,C42,C63,C73,C82,C85,D8 |
Chr4:56275414 |
GGA |
G |
2bp_deletion | frameshift_variant | 17 | A25,B107,B29,B3,B44,B54,B59,B70,B74,B81,B86,C4,C53,C64,C66,C76,C84 |
Chr4:56275497 |
AT |
A |
1bp_deletion | frameshift_variant | 134 | A1,A11,A14,A18,A2,A21,A24,A4,A9,B1,B10,B102,B103,B104,B109,B110,B111,B117,B119,B12,B120,B121,B122,B126,B127,B128,B13,B131,B132,B133,B135,B136,B137,B139,B140,B15,B17,B18,B24,B29,B3,B31,B32,B33,B34,B35,B38,B39,B4,B40,B41,B45,B46,B47,B48,B50,B53,B56,B60,B61,B62,B64,B65,B66,B7,B70,B75,B78,B79,B81,B82,B84,B85,B86,B88,B89,B9,B90,B91,B92,B96,B97,B99,C10,C16,C18,C19,C2,C20,C21,C22,C25,C28,C29,C3,C30,C31,C33,C34,C35,C39,C40,C42,C43,C44,C45,C47,C48,C5,C51,C52,C53,C54,C55,C57,C58,C59,C6,C65,C67,C7,C74,C79,C8,C80,C81,C82,C83,C9,D10,D11,D2,D5,D8 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057806101.1PF01535
PPR 153-174 aa
PF13812
PPR_3 179-227 aa
PF13041
PPR_2 180-229 aa
PF01535
PPR 184-212 aa
PF13812
PPR_3 210-260 aa
PF12854
PPR_1 213-244 aa
PF13041
PPR_2 215-262 aa
PF01535
PPR 218-248 aa
PF12854
PPR_1 246-279 aa
PF13041
PPR_2 250-298 aa
PF01535
PPR 253-283 aa
PF01535
PPR 288-318 aa
PF01535
PPR 328-352 aa
PF13812
PPR_3 420-470 aa
PF01535
PPR 429-455 aa
PF13041
PPR_2 429-474 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057806101.1 |
Pfam | PF01535 |
PPR | Repeat | 153 | 174 | 4.5e-46 | 152.6 | PPR repeat |
XP_057806101.1 |
Pfam | PF13812 |
PPR_3 | Repeat | 179 | 227 | 5.1e-32 | 110.5 | Pentatricopeptide repeat domain |
XP_057806101.1 |
Pfam | PF13041 |
PPR_2 | Repeat | 180 | 229 | 2.5e-68 | 226.7 | PPR repeat family |
XP_057806101.1 |
Pfam | PF01535 |
PPR | Repeat | 184 | 212 | 4.5e-46 | 152.6 | PPR repeat |
XP_057806101.1 |
Pfam | PF13812 |
PPR_3 | Repeat | 210 | 260 | 5.1e-32 | 110.5 | Pentatricopeptide repeat domain |
XP_057806101.1 |
Pfam | PF12854 |
PPR_1 | Repeat | 213 | 244 | 2.9e-61 | 203.6 | PPR repeat |
XP_057806101.1 |
Pfam | PF13041 |
PPR_2 | Repeat | 215 | 262 | 2.5e-68 | 226.7 | PPR repeat family |
XP_057806101.1 |
Pfam | PF01535 |
PPR | Repeat | 218 | 248 | 4.5e-46 | 152.6 | PPR repeat |
XP_057806101.1 |
Pfam | PF12854 |
PPR_1 | Repeat | 246 | 279 | 2.9e-61 | 203.6 | PPR repeat |
XP_057806101.1 |
Pfam | PF13041 |
PPR_2 | Repeat | 250 | 298 | 2.5e-68 | 226.7 | PPR repeat family |
XP_057806101.1 |
Pfam | PF01535 |
PPR | Repeat | 253 | 283 | 4.5e-46 | 152.6 | PPR repeat |
XP_057806101.1 |
Pfam | PF01535 |
PPR | Repeat | 288 | 318 | 4.5e-46 | 152.6 | PPR repeat |
XP_057806101.1 |
Pfam | PF01535 |
PPR | Repeat | 328 | 352 | 4.5e-46 | 152.6 | PPR repeat |
XP_057806101.1 |
Pfam | PF13812 |
PPR_3 | Repeat | 420 | 470 | 5.1e-32 | 110.5 | Pentatricopeptide repeat domain |
XP_057806101.1 |
Pfam | PF01535 |
PPR | Repeat | 429 | 455 | 4.5e-46 | 152.6 | PPR repeat |
XP_057806101.1 |
Pfam | PF13041 |
PPR_2 | Repeat | 429 | 474 | 2.5e-68 | 226.7 | PPR repeat family |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。