当前解析结果
SmilChr04G004162| 统一新 Gene ID | SmilChr04G004162 |
|---|---|
| 名称 | SmilChr04G004162 |
| 描述 | galactokinase |
| 染色体 / SeqID | Chr04 / NC_080390.1 |
| 坐标与链方向 | 56295448 - 56299479 / + |
| NCBI Gene ID | LOC131021044 |
|---|---|
| GeneID | 131021044 |
| locus_tag | - |
| NCBI Name | LOC131021044 |
| 原始查询 | SmilChr04G004162 |
| 来源 | GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | galactokinase |
| 产物 | galactokinase |
| Arabidopsis | AT3G06580 (GALK)Mevalonate/galactokinase family protein [Source:NCBI gene (formerly Entrezgene);Acc:819837] identity=74.7; qcov=1; evalue=0; confidence=high |
| Rice | Os03g0832600- identity=73.7; qcov=0.98; evalue=0; confidence=high |
| GO | GO:0004335 (galactokinase activity); GO:0005524 (ATP binding); GO:0005737 (cytoplasm); GO:0005829 (cytosol); GO:0006012 (galactose metabolic process); GO:0046835 (carbohydrate phosphorylation) |
| KEGG | smil00520 (Amino sugar and nucleotide sugar metabolism - Salvia miltiorrhiza (redroot sage)); smil01100 (Metabolic pathways - Salvia miltiorrhiza (redroot sage)); smil01250 (Biosynthesis of nucleotide sugars - Salvia miltiorrhiza (redroot sage)) |
| Pfam | PF00288 (GHMP_kinases_N); PF08544 (GHMP_kinases_C); PF10509 (GalKase_gal_bdg) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131021044 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cytoplasm | 细胞质 | 1.00000 | XP_057806107.1 |
| 2 | Nucleus | 细胞核 | 0.40000 | XP_057806107.1 |
| 3 | Chromosome | 染色体 | 0.00000 | XP_057806107.1 |
| 4 | Centromere | 着丝粒 | 0.00000 | XP_057806107.1 |
| 5 | Chromatin | 染色质 | 0.00000 | XP_057806107.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr4:56295797 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B136,B138 |
Chr4:56296346 |
GA |
G |
1bp_deletion | frameshift_variant | 1 | C3 |
Chr4:56296346 |
GA |
G |
1bp_deletion | CDS_variant | 1 | C3 |
Chr4:56296379 |
CA |
C |
1bp_deletion | frameshift_variant | 1 | C85 |
Chr4:56296379 |
CA |
C |
1bp_deletion | CDS_variant | 1 | C85 |
Chr4:56296481 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B103,B21,B97 |
Chr4:56298012 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | C22,C41 |
Chr4:56298348 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | A6 |
Chr4:56298489 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C41 |
Chr4:56298962 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B130,B64 |
Chr4:56299016 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | B120,B15,B24,C32,C68 |
Chr4:56299065 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | A4 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057806107.1PF10509
GalKase_gal_bdg 38-86 aa
PF00288
GHMP_kinases_N 146-218 aa
PF08544
GHMP_kinases_C 393-464 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057806107.1 |
Pfam | PF10509 |
GalKase_gal_bdg | Domain | 38 | 86 | 1.3e-23 | 83.0 | Galactokinase galactose-binding signature |
XP_057806107.1 |
Pfam | PF00288 |
GHMP_kinases_N | Domain | 146 | 218 | 2.9e-15 | 56.9 | GHMP kinases N terminal domain |
XP_057806107.1 |
Pfam | PF08544 |
GHMP_kinases_C | Domain | 393 | 464 | 1.6e-14 | 54.8 | GHMP kinases C terminal |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。