Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr04G004167`

染色体: Chr04 坐标: 56317336-56318794 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr04G004167`
名称	SmilChr04G004167
描述	gibberellin 2-beta-dioxygenase 2-like
染色体 / SeqID	Chr04 / NC_080390.1
坐标与链方向	56317336 - 56318794 / `+`

ID 对照

NCBI Gene ID	`LOC131021051`
GeneID	`131021051`
locus_tag	`-`
NCBI Name	`LOC131021051`
原始查询	`SmilChr04G004167`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	gibberellin 2-beta-dioxygenase 2-like
产物	gibberellin 2-beta-dioxygenase 2-like
Arabidopsis	`AT1G02400` (GA2OX6) gibberellin 2-oxidase 6 [Source:NCBI gene (formerly Entrezgene);Acc:839508] identity=52.1; qcov=1.01; evalue=3.14e-108; confidence=high
Rice	`Os01g0332200` (GA2OX2) - identity=49.1; qcov=1.04; evalue=4.06e-90; confidence=high
GO	GO:0009416 (response to light stimulus); GO:0045487 (gibberellin catabolic process); GO:0052634 (GO:0052634)
KEGG	smil00904 (Diterpenoid biosynthesis - Salvia miltiorrhiza (redroot sage)); smil01110 (Biosynthesis of secondary metabolites - Salvia miltiorrhiza (redroot sage))
Pfam	PF03171 (2OG-FeII_Oxy); PF14226 (DIOX_N)
InterPro	-
eggNOG	-
NR	GeneID:131021051

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cytoplasm	细胞质	1.00000	`XP_057806113.1`
2	Cytosol	细胞质基质	1.00000	`XP_057806113.1`
3	Nucleus	细胞核	0.40000	`XP_057806113.1`
4	Chromosome	染色体	0.00000	`XP_057806113.1`
5	Centromere	着丝粒	0.00000	`XP_057806113.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr4:56317429`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C30
`Chr4:56317520`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	C84,D6
`Chr4:56317598`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B24,B98,C32,C68
`Chr4:56318135`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B2
`Chr4:56318431`	`AC`	`A`	1bp_deletion	frameshift_variant	6	B134,B31,B62,C1,C17,C80
`Chr4:56318438`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	B121,B36,B90,B92,C39
`Chr4:56318701`	`AC`	`A`	1bp_deletion	frameshift_variant	99	A1,A10,A13,A14,A16,A18,A2,A20,A21,A22,A3,A7,A9,B1,B102,B103,B107,B113,B12,B120,B122,B123,B124,B125,B128,B13,B130,B131,B132,B134,B136,B137,B14,B15,B21,B22,B23,B26,B31,B32,B33,B37,B40,B48,B49,B5,B51,B52,B53,B54,B55,B57,B60,B62,B65,B7,B71,B73,B77,B78,B83,B84,B87,B9,B90,B91,B92,B99,C1,C17,C18,C19,C2,C29,C31,C38,C42,C44,C45,C46,C49,C50,C53,C55,C61,C63,C70,C74,C76,C8,C80,C81,C86,C87,D1,D11,D2,D8,D9
`Chr4:56318718`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	A21,C45

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057806113.1

312 aa

156

312

DIOX_N

2OG-FeII_Oxy

PF14226 DIOX_N 13-82 aa PF03171 2OG-FeII_Oxy 166-268 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057806113.1`	Pfam	`PF14226`	DIOX_N	Family	13	82	2.3e-14	54.7	non-haem dioxygenase in morphine synthesis N-terminal
`XP_057806113.1`	Pfam	`PF03171`	2OG-FeII_Oxy	Domain	166	268	4.3e-26	91.9	2OG-Fe(II) oxygenase superfamily

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA

XM_057950130.1
TATATTCTTGTTGCAAGTATATCCATAGAGAGAGAGAGATGGAGAATATTACTGTAGGAGATGATCATATAGAGCTCCCAATCGTAGACCTTAGGAGGGAGCGATCAGAAGCTTCGAGAATGATCGTAAAAGCGTGCGAGGAGTTCGGATTCTTCAAGGTGATAAACCATGGTGTGAAGCAGGAGATTATTTCTCTCATGGAAGAAGAAGCTTCAATGTTTTTCTCCAAACCCGTATCCGAGAAGAACCGGGCCGGACCT...

CDS

1 records

下载 CDS FASTA

LOC131021051
ATGGAGAATATTACTGTAGGAGATGATCATATAGAGCTCCCAATCGTAGACCTTAGGAGGGAGCGATCAGAAGCTTCGAGAATGATCGTAAAAGCGTGCGAGGAGTTCGGATTCTTCAAGGTGATAAACCATGGTGTGAAGCAGGAGATTATTTCTCTCATGGAAGAAGAAGCTTCAATGTTTTTCTCCAAACCCGTATCCGAGAAGAACCGGGCCGGACCTCCGGATCCCTACGGATATGGTTCCCACAATATTGGGTT...

Protein

1 records

下载 Protein FASTA

XP_057806113.1
MENITVGDDHIELPIVDLRRERSEASRMIVKACEEFGFFKVINHGVKQEIISLMEEEASMFFSKPVSEKNRAGPPDPYGYGSHNIGLNGDVGEVEYLLLQANPLFISHKSKYISSHPQQFSYVVSRYVEAVRELACEILDLIVEGLWAEAQPVSTLSGLVRDLDSDSLIRLNHYPPTDVSQPSAHKIGFGAHTDPQILTILRSNGSSGLQLSLQGGVWVPVDPHPPSAFCVNVGDVLQAMTNGRFVSVKHRAVVNSIKSR...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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JBrowse

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