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中文 EN

Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。
示例

当前解析结果

SmilChr04G004180

染色体: Chr04 坐标: 56383202-56385072 链方向: - 类型: protein_coding

基本信息

统一新 Gene IDSmilChr04G004180
名称SmilChr04G004180
描述pentatricopeptide repeat-containing protein At1g09900
染色体 / SeqIDChr04 / NC_080390.1
坐标与链方向56383202 - 56385072 / -

ID 对照

NCBI Gene IDLOC131021065
GeneID131021065
locus_tag-
NCBI NameLOC131021065
原始查询SmilChr04G004180

查看完整 ID 对照表

功能注释

来源GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述pentatricopeptide repeat-containing protein At1g09900
产物pentatricopeptide repeat-containing protein At1g09900
ArabidopsisAT1G09900 (AT1G09900)
Pentatricopeptide repeat (PPR-like) superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:837522]
identity=69.8; qcov=1.03; evalue=0; confidence=high
RiceOs02g0565400 (WSL4)
-
identity=56.3; qcov=0.854; evalue=0; confidence=high
GOGO:0005515 (protein binding)
KEGG-
PfamPF01535 (PPR); PF12854 (PPR_1); PF13041 (PPR_2); PF13812 (PPR_3); PF17177 (PPR_long); PF23276 (TPR_24)
InterPro-
eggNOG-
NRGeneID:131021065

打开注释模块

亚细胞定位 Top 5

Rank定位位置中文ScoreProtein ID
1 Mitochondrion 线粒体 0.60000 XP_057806127.1
2 Chloroplast 叶绿体 0.60000 XP_057806127.1
3 Chloroplast stroma 叶绿体基质 0.20000 XP_057806127.1
4 Nucleus 细胞核 0.00000 XP_057806127.1
5 Chromosome 染色体 0.00000 XP_057806127.1

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置 REF ALT 类型 影响 携带材料数 材料
Chr4:56384000 AG A 1bp_deletion frameshift_variant 1 B125
Chr4:56384000 AG A 1bp_deletion CDS_variant 1 B125
Chr4:56384118 C T EMS_canonical_SNV CDS_variant 3 B106,B74,C70
Chr4:56384431 G A EMS_canonical_SNV CDS_variant 2 B104,D7

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057806127.1
576 aa
N
1
288
576
PPR_long
PPR_3
PPR_2
PPR
TPR_24
PPR_1
PPR_2
PPR
PPR_3
PPR_1
PPR_2
PPR
PPR_1
PPR_3
PPR_2
PPR
PPR_3
TPR_24
PPR_1
PPR_2
PPR
PPR_3
PPR_1
PPR_2
PPR
PPR_3
PPR_long
PPR_1
PPR_2
PPR
PPR_1
PPR_2
TPR_24
PPR
PPR_3
PPR_1
PPR_2
PPR
TPR_24
PPR_1
PPR_2
PPR
PPR_3
PPR_long
PPR_1
PPR
PPR_2
PPR_3
PPR_1
PPR_2
PPR
PPR_1
PPR
C
PF17177 PPR_long 96-208 aa PF13812 PPR_3 103-160 aa PF13041 PPR_2 113-162 aa PF01535 PPR 118-145 aa PF23276 TPR_24 126-240 aa PF12854 PPR_1 145-177 aa PF13041 PPR_2 148-176 aa PF01535 PPR 151-176 aa PF13812 PPR_3 173-227 aa PF12854 PPR_1 178-207 aa PF13041 PPR_2 180-229 aa PF01535 PPR 183-206 aa PF12854 PPR_1 211-244 aa PF13812 PPR_3 212-262 aa PF13041 PPR_2 215-264 aa PF01535 PPR 218-248 aa PF13812 PPR_3 238-295 aa PF23276 TPR_24 244-346 aa PF12854 PPR_1 246-278 aa PF13041 PPR_2 250-298 aa PF01535 PPR 253-283 aa PF13812 PPR_3 275-331 aa PF12854 PPR_1 282-313 aa PF13041 PPR_2 287-334 aa PF01535 PPR 288-318 aa PF13812 PPR_3 308-366 aa PF17177 PPR_long 308-421 aa PF12854 PPR_1 316-348 aa PF13041 PPR_2 320-369 aa PF01535 PPR 323-353 aa PF12854 PPR_1 352-383 aa PF13041 PPR_2 355-404 aa PF23276 TPR_24 357-451 aa PF01535 PPR 359-388 aa PF13812 PPR_3 382-435 aa PF12854 PPR_1 386-417 aa PF13041 PPR_2 390-438 aa PF01535 PPR 393-423 aa PF23276 TPR_24 405-489 aa PF12854 PPR_1 421-454 aa PF13041 PPR_2 427-473 aa PF01535 PPR 428-458 aa PF13812 PPR_3 434-470 aa PF17177 PPR_long 443-572 aa PF12854 PPR_1 456-487 aa PF01535 PPR 463-493 aa PF13041 PPR_2 468-509 aa PF13812 PPR_3 485-540 aa PF12854 PPR_1 492-524 aa PF13041 PPR_2 495-542 aa PF01535 PPR 498-528 aa PF12854 PPR_1 526-557 aa PF01535 PPR 533-562 aa
Protein ID 来源 结构域编号 结构域名称 类型 起始 aa 终止 aa E-value Score 说明
XP_057806127.1 Pfam PF17177 PPR_long Repeat 96 208 9.8e-39 133.6 Pentacotripeptide-repeat region of PRORP
XP_057806127.1 Pfam PF13812 PPR_3 Repeat 103 160 1.4e-79 262.9 Pentatricopeptide repeat domain
XP_057806127.1 Pfam PF13041 PPR_2 Repeat 113 162 4.8e-177 574.8 PPR repeat family
XP_057806127.1 Pfam PF01535 PPR Repeat 118 145 1.6e-102 329.6 PPR repeat
XP_057806127.1 Pfam PF23276 TPR_24 Repeat 126 240 1.3e-41 142.3 Pentatricopeptide repeat-containing protein
XP_057806127.1 Pfam PF12854 PPR_1 Repeat 145 177 1.2e-149 486.3 PPR repeat
XP_057806127.1 Pfam PF13041 PPR_2 Repeat 148 176 4.8e-177 574.8 PPR repeat family
XP_057806127.1 Pfam PF01535 PPR Repeat 151 176 1.6e-102 329.6 PPR repeat
XP_057806127.1 Pfam PF13812 PPR_3 Repeat 173 227 1.4e-79 262.9 Pentatricopeptide repeat domain
XP_057806127.1 Pfam PF12854 PPR_1 Repeat 178 207 1.2e-149 486.3 PPR repeat
XP_057806127.1 Pfam PF13041 PPR_2 Repeat 180 229 4.8e-177 574.8 PPR repeat family
XP_057806127.1 Pfam PF01535 PPR Repeat 183 206 1.6e-102 329.6 PPR repeat
XP_057806127.1 Pfam PF12854 PPR_1 Repeat 211 244 1.2e-149 486.3 PPR repeat
XP_057806127.1 Pfam PF13812 PPR_3 Repeat 212 262 1.4e-79 262.9 Pentatricopeptide repeat domain
XP_057806127.1 Pfam PF13041 PPR_2 Repeat 215 264 4.8e-177 574.8 PPR repeat family
XP_057806127.1 Pfam PF01535 PPR Repeat 218 248 1.6e-102 329.6 PPR repeat
XP_057806127.1 Pfam PF13812 PPR_3 Repeat 238 295 1.4e-79 262.9 Pentatricopeptide repeat domain
XP_057806127.1 Pfam PF23276 TPR_24 Repeat 244 346 1.3e-41 142.3 Pentatricopeptide repeat-containing protein
XP_057806127.1 Pfam PF12854 PPR_1 Repeat 246 278 1.2e-149 486.3 PPR repeat
XP_057806127.1 Pfam PF13041 PPR_2 Repeat 250 298 4.8e-177 574.8 PPR repeat family
XP_057806127.1 Pfam PF01535 PPR Repeat 253 283 1.6e-102 329.6 PPR repeat
XP_057806127.1 Pfam PF13812 PPR_3 Repeat 275 331 1.4e-79 262.9 Pentatricopeptide repeat domain
XP_057806127.1 Pfam PF12854 PPR_1 Repeat 282 313 1.2e-149 486.3 PPR repeat
XP_057806127.1 Pfam PF13041 PPR_2 Repeat 287 334 4.8e-177 574.8 PPR repeat family
XP_057806127.1 Pfam PF01535 PPR Repeat 288 318 1.6e-102 329.6 PPR repeat
XP_057806127.1 Pfam PF13812 PPR_3 Repeat 308 366 1.4e-79 262.9 Pentatricopeptide repeat domain
XP_057806127.1 Pfam PF17177 PPR_long Repeat 308 421 9.8e-39 133.6 Pentacotripeptide-repeat region of PRORP
XP_057806127.1 Pfam PF12854 PPR_1 Repeat 316 348 1.2e-149 486.3 PPR repeat
XP_057806127.1 Pfam PF13041 PPR_2 Repeat 320 369 4.8e-177 574.8 PPR repeat family
XP_057806127.1 Pfam PF01535 PPR Repeat 323 353 1.6e-102 329.6 PPR repeat
XP_057806127.1 Pfam PF12854 PPR_1 Repeat 352 383 1.2e-149 486.3 PPR repeat
XP_057806127.1 Pfam PF13041 PPR_2 Repeat 355 404 4.8e-177 574.8 PPR repeat family
XP_057806127.1 Pfam PF23276 TPR_24 Repeat 357 451 1.3e-41 142.3 Pentatricopeptide repeat-containing protein
XP_057806127.1 Pfam PF01535 PPR Repeat 359 388 1.6e-102 329.6 PPR repeat
XP_057806127.1 Pfam PF13812 PPR_3 Repeat 382 435 1.4e-79 262.9 Pentatricopeptide repeat domain
XP_057806127.1 Pfam PF12854 PPR_1 Repeat 386 417 1.2e-149 486.3 PPR repeat
XP_057806127.1 Pfam PF13041 PPR_2 Repeat 390 438 4.8e-177 574.8 PPR repeat family
XP_057806127.1 Pfam PF01535 PPR Repeat 393 423 1.6e-102 329.6 PPR repeat
XP_057806127.1 Pfam PF23276 TPR_24 Repeat 405 489 1.3e-41 142.3 Pentatricopeptide repeat-containing protein
XP_057806127.1 Pfam PF12854 PPR_1 Repeat 421 454 1.2e-149 486.3 PPR repeat
XP_057806127.1 Pfam PF13041 PPR_2 Repeat 427 473 4.8e-177 574.8 PPR repeat family
XP_057806127.1 Pfam PF01535 PPR Repeat 428 458 1.6e-102 329.6 PPR repeat
XP_057806127.1 Pfam PF13812 PPR_3 Repeat 434 470 1.4e-79 262.9 Pentatricopeptide repeat domain
XP_057806127.1 Pfam PF17177 PPR_long Repeat 443 572 9.8e-39 133.6 Pentacotripeptide-repeat region of PRORP
XP_057806127.1 Pfam PF12854 PPR_1 Repeat 456 487 1.2e-149 486.3 PPR repeat
XP_057806127.1 Pfam PF01535 PPR Repeat 463 493 1.6e-102 329.6 PPR repeat
XP_057806127.1 Pfam PF13041 PPR_2 Repeat 468 509 4.8e-177 574.8 PPR repeat family
XP_057806127.1 Pfam PF13812 PPR_3 Repeat 485 540 1.4e-79 262.9 Pentatricopeptide repeat domain
XP_057806127.1 Pfam PF12854 PPR_1 Repeat 492 524 1.2e-149 486.3 PPR repeat
XP_057806127.1 Pfam PF13041 PPR_2 Repeat 495 542 4.8e-177 574.8 PPR repeat family
XP_057806127.1 Pfam PF01535 PPR Repeat 498 528 1.6e-102 329.6 PPR repeat
XP_057806127.1 Pfam PF12854 PPR_1 Repeat 526 557 1.2e-149 486.3 PPR repeat
XP_057806127.1 Pfam PF01535 PPR Repeat 533 562 1.6e-102 329.6 PPR repeat

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA
XM_057950144.1
ATGGAGTTAAGTGTTCCCCACCAACAGTTTTGCTCCTTTCGGAAAATTAGACACCATAAAGATAAGGGCTTTGGGTGTTGTAAGTCTCCCTCGGGCTCCGGCTCAGGCCAAATATTTCCGGTGAAGAAGCAAGGGTATAGGAAGCAGAGGCGGTGGGTTTTAGCTGTTTCTTCTGCGGTTGACACCTGCTGCAACAACAACGGCAGATTGAATGTGGAAAGAAGCCATAGTTTTGAGGAATTCGAGAACAATAACTATCT...

CDS

1 records

下载 CDS FASTA
LOC131021065
ATGGAGTTAAGTGTTCCCCACCAACAGTTTTGCTCCTTTCGGAAAATTAGACACCATAAAGATAAGGGCTTTGGGTGTTGTAAGTCTCCCTCGGGCTCCGGCTCAGGCCAAATATTTCCGGTGAAGAAGCAAGGGTATAGGAAGCAGAGGCGGTGGGTTTTAGCTGTTTCTTCTGCGGTTGACACCTGCTGCAACAACAACGGCAGATTGAATGTGGAAAGAAGCCATAGTTTTGAGGAATTCGAGAACAATAACTATCT...

Protein

1 records

下载 Protein FASTA
XP_057806127.1
MELSVPHQQFCSFRKIRHHKDKGFGCCKSPSGSGSGQIFPVKKQGYRKQRRWVLAVSSAVDTCCNNNGRLNVERSHSFEEFENNNYLRRLVRNGELEQGFKHLEKMVSHGDIPDIIPCTSLIRGFCRSGRTQKATRVLDILEQSGAVPDVITYNVLISGYCKSGEISSALKVLERMSVAPDVVTYNTILRSLCDSGKLKQAMEVLDQQLRKECYPDVITYTILIEATCKESGVGQAMKLLDEMRNKGCKPDVVTFNVLIN...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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