当前解析结果
SmilChr04G004185| 统一新 Gene ID | SmilChr04G004185 |
|---|---|
| 名称 | SmilChr04G004185 |
| 描述 | CBL-interacting serine/threonine-protein kinase 1-like |
| 染色体 / SeqID | Chr04 / NC_080390.1 |
| 坐标与链方向 | 56404228 - 56407444 / - |
| NCBI Gene ID | LOC131021066 |
|---|---|
| GeneID | 131021066 |
| locus_tag | - |
| NCBI Name | LOC131021066 |
| 原始查询 | SmilChr04G004185 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | CBL-interacting serine/threonine-protein kinase 1-like |
| 产物 | CBL-interacting serine/threonine-protein kinase 1-like |
| Arabidopsis | AT3G17510 (CIPK1)CBL-interacting protein kinase 1 [Source:NCBI gene (formerly Entrezgene);Acc:821016] identity=60.5; qcov=1.04; evalue=6.55e-180; confidence=high |
| Rice | Os01g0292200 (OsCIPK01)- identity=58.1; qcov=1.04; evalue=9.65e-177; confidence=high |
| GO | GO:0004672 (protein kinase activity); GO:0005524 (ATP binding); GO:0006468 (protein phosphorylation); GO:0007165 (signal transduction) |
| KEGG | - |
| Pfam | PF00069 (Pkinase); PF03822 (NAF); PF07714 (PK_Tyr_Ser-Thr) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131021066 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cytosol | 细胞质基质 | 1.00000 | XP_057806128.1 |
| 2 | Cytoplasm | 细胞质 | 0.80000 | XP_057806128.1 |
| 3 | Nucleus | 细胞核 | 0.60000 | XP_057806129.1 |
| 4 | Cell membrane | 细胞膜 | 0.20000 | XP_057806128.1 |
| 5 | Chromosome | 染色体 | 0.00000 | XP_057806128.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr4:56404437 |
G |
A |
EMS_canonical_SNV | stop_gained | 2 | B120,C57 |
Chr4:56404437 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B120,C57 |
Chr4:56406188 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B90,B92,C70,D10 |
Chr4:56406190 |
TGG |
T |
2bp_deletion | frameshift_variant | 3 | B90,B92,C70 |
Chr4:56406190 |
TGG |
T |
2bp_deletion | CDS_variant | 3 | B90,B92,C70 |
Chr4:56406195 |
TTG |
T |
2bp_deletion | frameshift_variant | 3 | B90,B92,C70 |
Chr4:56406195 |
TTG |
T |
2bp_deletion | CDS_variant | 3 | B90,B92,C70 |
Chr4:56406201 |
GCT |
G |
2bp_deletion | frameshift_variant | 4 | B90,B92,C70,D10 |
Chr4:56406201 |
GCT |
G |
2bp_deletion | CDS_variant | 4 | B90,B92,C70,D10 |
Chr4:56406206 |
GA |
G |
1bp_deletion | frameshift_variant | 4 | B90,B92,C70,D10 |
Chr4:56406206 |
GA |
G |
1bp_deletion | CDS_variant | 4 | B90,B92,C70,D10 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057806128.1PF00069
Pkinase 28-283 aa
PF07714
PK_Tyr_Ser-Thr 30-278 aa
PF03822
NAF 322-380 aa
XP_057806129.1PF00069
Pkinase 28-117 aa
PF07714
PK_Tyr_Ser-Thr 30-115 aa
PF07714
PK_Tyr_Ser-Thr 119-242 aa
PF00069
Pkinase 119-247 aa
PF03822
NAF 286-344 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057806128.1 |
Pfam | PF00069 |
Pkinase | Domain | 28 | 283 | 1.5e-74 | 251.5 | Protein kinase domain |
XP_057806128.1 |
Pfam | PF07714 |
PK_Tyr_Ser-Thr | Domain | 30 | 278 | 2.3e-39 | 136.0 | Protein tyrosine and serine/threonine kinase |
XP_057806128.1 |
Pfam | PF03822 |
NAF | Domain | 322 | 380 | 2.1e-18 | 66.9 | NAF domain |
XP_057806129.1 |
Pfam | PF00069 |
Pkinase | Domain | 28 | 117 | 9.8e-54 | 183.2 | Protein kinase domain |
XP_057806129.1 |
Pfam | PF07714 |
PK_Tyr_Ser-Thr | Domain | 30 | 115 | 7e-28 | 98.4 | Protein tyrosine and serine/threonine kinase |
XP_057806129.1 |
Pfam | PF07714 |
PK_Tyr_Ser-Thr | Domain | 119 | 242 | 7e-28 | 98.4 | Protein tyrosine and serine/threonine kinase |
XP_057806129.1 |
Pfam | PF00069 |
Pkinase | Domain | 119 | 247 | 9.8e-54 | 183.2 | Protein kinase domain |
XP_057806129.1 |
Pfam | PF03822 |
NAF | Domain | 286 | 344 | 1.9e-18 | 67.0 | NAF domain |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
2 records
下载 cDNA FASTA2 records
下载 CDS FASTA2 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。