Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr05G000011`

染色体: Chr05 坐标: 48990-52794 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr05G000011`
名称	SmilChr05G000011
描述	uncharacterized SmilChr05G000011
染色体 / SeqID	Chr05 / NC_080391.1
坐标与链方向	48990 - 52794 / `-`

ID 对照

NCBI Gene ID	`LOC131026497`
GeneID	`131026497`
locus_tag	`-`
NCBI Name	`LOC131026497`
原始查询	`SmilChr05G000011`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	Endosomal targeting BRO1-like domain-containing protein [Source:NCBI gene (formerly Entrezgene);Acc:843674]; symbol=AT1G73390; hit=AT1G73390; species=arabidopsis; confidence=high
产物	Endosomal targeting BRO1-like domain-containing protein [Source:NCBI gene (formerly Entrezgene);Acc:843674]; symbol=AT1G73390; hit=AT1G73390; species=arabidopsis; confidence=high
Arabidopsis	`AT1G73390` (AT1G73390) Endosomal targeting BRO1-like domain-containing protein [Source:NCBI gene (formerly Entrezgene);Acc:843674] identity=77.6; qcov=0.99; evalue=0; confidence=high
Rice	`Os04g0527400` - identity=63; qcov=0.979; evalue=0; confidence=high
GO	-
KEGG	-
Pfam	PF03097 (BRO1)
InterPro	-
eggNOG	-
NR	GeneID:131026497

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cytoplasm	细胞质	1.00000	`XP_057812352.1`
2	Cytosol	细胞质基质	1.00000	`XP_057812352.1`
3	Cytoplasmic vesicle	细胞质囊泡	0.20000	`XP_057812352.1`
4	Nucleus	细胞核	0.00000	`XP_057812352.1`
5	Chromosome	染色体	0.00000	`XP_057812352.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr5:49488`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	B123,B136,B30,B60,C75
`Chr5:49872`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	A6,B81,B88
`Chr5:50316`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B5
`Chr5:51765`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B101,C18,C8
`Chr5:51786`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B106,C21
`Chr5:51859`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	C32,C68,C78

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057812352.1

420 aa

210

420

BRO1

PF03097 BRO1 73-334 aa

XP_057812353.1

420 aa

210

420

BRO1

PF03097 BRO1 73-334 aa

XP_057812354.1

420 aa

210

420

BRO1

PF03097 BRO1 73-334 aa

XP_057812355.1

420 aa

210

420

BRO1

PF03097 BRO1 73-334 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057812352.1`	Pfam	`PF03097`	BRO1	Repeat	73	334	1.4e-15	57.8	BRO1-like domain
`XP_057812353.1`	Pfam	`PF03097`	BRO1	Repeat	73	334	1.4e-15	57.8	BRO1-like domain
`XP_057812354.1`	Pfam	`PF03097`	BRO1	Repeat	73	334	1.4e-15	57.8	BRO1-like domain
`XP_057812355.1`	Pfam	`PF03097`	BRO1	Repeat	73	334	1.4e-15	57.8	BRO1-like domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

4 records

下载 cDNA FASTA

XM_057956369.1
AATTCAAGATCAAAACTTTCCTTTTTGGGACTTATAATATTCAGCGCAAAACCATAACAATATACTAGTTTGAAGCTTGAACGTAATATCGATATAAGCAGTTCCAAAAACAAAACAAAACAAAACAAAACAAAAGCTCTTTCTCATTCCATTTTGTCTTTTCTTAAATATCTGAGCTAGCCAGTGGCTTTCTCTTCCTATCTATGATTGAAATTATGCTGTGCTCAATGATGAATGTTTCAGCTCTATTCTACTTTCAG...

XM_057956371.1
AAAAACAAAACAAAACAAAACAAAACAAAAGCTCTTTCTCATTCCATTTTGTCTTTTCTTAAATATCTGAGCTAGCCAGTGGCTTTCTCTTCCTATCTATGATTGAAATTATGCTGTGCTCAATGATGAATGTTTCAGCTCTATTCTACTTTCAGTTACACTCTGTAGATTTAGGAAATGGGATGCTTTGTATCGACTCCGAAAGACACGGGCGAGAACAGGAGGCGGCCAGCAAACATCGGGGAGGTTTCTGTGTTCGT...

CDS

4 records

下载 CDS FASTA

LOC131026497
ATGGGATGCTTTGTATCGACTCCGAAAGACACGGGCGAGAACAGGAGGCGGCCAGCAAACATCGGGGAGGTTTCTGTGTTCGTCCCAGGCCTACGGATCCCTAAACCGGTCAATTTCGCTCAGTCACTGGGAAATAATGTAACTAAGAGTTCAGTGGAACGCCTTTCGGCTCTTAGAAACAGAATAGTGGTTATGGCAGGGCATGATGCTCCGACTATTACACGAACCAGAAGAAGAACGGCCAGCCAGCACGGGAGATC...

Protein

4 records

下载 Protein FASTA

XP_057812352.1
MGCFVSTPKDTGENRRRPANIGEVSVFVPGLRIPKPVNFAQSLGNNVTKSSVERLSALRNRIVVMAGHDAPTITRTRRRTASQHGRSILRDLLKALEEYLPVLLGLVKDGSPLQHKVQFSWVNQEDEVEETTMYSAWYEVLSVLHFMATLLLSQANLLLLPRTSTDGFQPKVSEENRRSAVDIFLKAAGYLDCAVRHVLPHLPIELRRNLPVDLAEGVLRALCLQALGQGVDIQLGLAIENSKATLAVKRRLACEMVKYW...

XP_057812353.1
MGCFVSTPKDTGENRRRPANIGEVSVFVPGLRIPKPVNFAQSLGNNVTKSSVERLSALRNRIVVMAGHDAPTITRTRRRTASQHGRSILRDLLKALEEYLPVLLGLVKDGSPLQHKVQFSWVNQEDEVEETTMYSAWYEVLSVLHFMATLLLSQANLLLLPRTSTDGFQPKVSEENRRSAVDIFLKAAGYLDCAVRHVLPHLPIELRRNLPVDLAEGVLRALCLQALGQGVDIQLGLAIENSKATLAVKRRLACEMVKYW...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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