Gene Card

Search by standard ID, NCBI Gene ID, GeneID, locus tag, transcript ID, protein ID, or a manually reviewed literature gene name. The page resolves the query to a Red Sage gene and integrates coordinates, sequences, annotations, subcellular localization, EMS variants, and downloads.

Resolved gene

`SmilChr05G000021`

Chromosome: Chr05 Coordinates: 85833-89026 Strand: + Biotype: protein_coding

Basic Information

Standard Gene ID	`SmilChr05G000021`
Name	SmilChr05G000021
Description	putative late blight resistance protein homolog R1A-10
Chromosome / SeqID	Chr05 / NC_080391.1
Coordinates and Strand	85833 - 89026 / `+`

ID Mapping

NCBI Gene ID	`LOC131026508`
GeneID	`131026508`
locus_tag	`-`
NCBI Name	`LOC131026508`
Original query	`SmilChr05G000021`

Open ID mapping

Functional Annotation

Source	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
Description	putative late blight resistance protein homolog R1A-10
Product	putative late blight resistance protein homolog R1A-10
Arabidopsis	`AT1G53350` (AT1G53350) Disease resistance protein (CC-NBS-LRR class) family [Source:NCBI gene (formerly Entrezgene);Acc:841771] identity=23.9; qcov=0.934; evalue=1.24e-37; confidence=weak
Rice	`Os08g0424700` (P0456B03.103) - identity=26.7; qcov=0.774; evalue=1.89e-38; confidence=low
GO	GO:0043531 (ADP binding); GO:0098542 (defense response to other organism)
KEGG	-
Pfam	PF00931 (NB-ARC); PF23598 (LRR_14)
InterPro	-
eggNOG	-
NR	GeneID:131026508

Open annotation module

Subcellular Localization Top 5

Rank	Location	Chinese	Score	Protein ID
1	Cell membrane	细胞膜	0.80000	`XP_057812366.1`
2	Cytosol	细胞质基质	0.20000	`XP_057812366.1`
3	Nucleus	细胞核	0.00000	`XP_057812366.1`
4	Chromosome	染色体	0.00000	`XP_057812366.1`
5	Centromere	着丝粒	0.00000	`XP_057812366.1`

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EMS Mutant Variants

The table shows the first 12 candidate EMS variants for this gene. Open the EMS module for full filtering and downloads.

Position	REF	ALT	Type	Effect	Carriers	Samples
`Chr5:85858`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C79
`Chr5:85874`	`T`	`TA`	1bp_insertion	frameshift_variant	1	C79
`Chr5:85874`	`T`	`TA`	1bp_insertion	CDS_variant	1	C79
`Chr5:85876`	`T`	`TA`	1bp_insertion	frameshift_variant	1	B115
`Chr5:85876`	`T`	`TA`	1bp_insertion	CDS_variant	1	B115
`Chr5:85883`	`A`	`AT`	1bp_insertion	frameshift_variant	1	C79
`Chr5:85883`	`A`	`AT`	1bp_insertion	CDS_variant	1	C79
`Chr5:85886`	`AAT`	`A`	2bp_deletion	frameshift_variant	4	B106,B59,C21,C85
`Chr5:85886`	`AAT`	`A`	2bp_deletion	CDS_variant	4	B106,B59,C21,C85
`Chr5:85911`	`A`	`AT`	1bp_insertion	frameshift_variant	7	B12,B125,B24,B77,B90,B92,B93
`Chr5:85938`	`T`	`TA`	1bp_insertion	frameshift_variant	5	B124,B134,B25,C22,C43
`Chr5:85938`	`T`	`TA`	1bp_insertion	CDS_variant	5	B124,B134,B25,C22,C43

Open EMS variants

Predicted Protein Domains

Domain results are from the Pfam-A HMM database and HMMER hmmscan; positions are amino-acid coordinates on the corresponding protein sequence.

XP_057812366.1

945 aa

472

945

NB-ARC

LRR_14

PF00931 NB-ARC 235-402 aa PF23598 LRR_14 609-895 aa

Protein ID	Source	Domain ID	Domain name	Type	Start aa	End aa	E-value	Score	Description
`XP_057812366.1`	Pfam	`PF00931`	NB-ARC	Domain	235	402	5.9e-28	98.3	NB-ARC domain
`XP_057812366.1`	Pfam	`PF23598`	LRR_14	Repeat	609	895	2.1e-15	57.1	Leucine-rich repeat region

cDNA / CDS / Protein Sequences

Download genomic DNA (gene region only)

Every public gene has transcript sequence from the reference annotation. Protein-coding genes also have CDS and protein sequences. CDS and protein downloads do not apply to noncoding RNA. Version suffixes of original accessions are retained.

cDNA

1 records

Download cDNA FASTA

XM_057956383.1
ATATGGCCTCAATTTCAACGAAACTGTGTGGATCAATACGATTTAAAAATAATAATGGTGTTTATGGTGGTATCATTAACCAATACATGTGTAGAGCTGACTTTGTGCAGAGGCTCAACCACTCTCATTTTATCAATTGCACCTTCCAAATCCTTATCCTTCCACCACCTACCGCCGTTTCAGACCTTCCACCACCACCACCACCACCACAATCATATTTCAACCAAGTCATGGCAGCTTATGGTGCAGCAACTTCTCTC...

CDS

1 records

Download CDS FASTA

LOC131026508
ATGGCCTCAATTTCAACGAAACTGTGTGGATCAATACGATTTAAAAATAATAATGGTGTTTATGGTGGTATCATTAACCAATACATGTGTAGAGCTGACTTTGTGCAGAGGCTCAACCACTCTCATTTTATCAATTGCACCTTCCAAATCCTTATCCTTCCACCACCTACCGCCGTTTCAGACCTTCCACCACCACCACCACCACCACAATCATATTTCAACCAAGTCATGGCAGCTTATGGTGCAGCAACTTCTCTCAA...

Protein

1 records

Download Protein FASTA

XP_057812366.1
MASISTKLCGSIRFKNNNGVYGGIINQYMCRADFVQRLNHSHFINCTFQILILPPPTAVSDLPPPPPPPQSYFNQVMAAYGAATSLKITIHRILQSSRLFLVSPSLHILLPAYEEMDRLQKVLLKLDDTSCSKIRTKVNDVDERIKEAVWEFEDLLESHVLHQILPHLESERDRLSFSVDLQSLLHHVYCFVLTVRMITVEYLIEMENMAEEEGEPISSRIDFGVIKSKMVGLSDEFEKARDYLLDENSENCYSLIGMAG...

Flanking Sequence Downloads

Upstream/downstream length is capped at 10000 bp. Negative-strand genes are reverse-complemented so the exported FASTA follows transcriptional 5′ to 3′ orientation.

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