Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr05G000023`

染色体: Chr05 坐标: 104996-116536 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr05G000023`
名称	SmilChr05G000023
描述	putative late blight resistance protein homolog R1B-23
染色体 / SeqID	Chr05 / NC_080391.1
坐标与链方向	104996 - 116536 / `+`

ID 对照

NCBI Gene ID	`LOC131026509`
GeneID	`131026509`
locus_tag	`-`
NCBI Name	`LOC131026509`
原始查询	`SmilChr05G000023`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	putative late blight resistance protein homolog R1B-23
产物	putative late blight resistance protein homolog R1B-23
Arabidopsis	`AT1G53350` (AT1G53350) Disease resistance protein (CC-NBS-LRR class) family [Source:NCBI gene (formerly Entrezgene);Acc:841771] identity=24.8; qcov=1.02; evalue=1.16e-36; confidence=weak
Rice	`Os07g0186500` - identity=26.1; qcov=0.776; evalue=4.58e-36; confidence=low
GO	GO:0043531 (ADP binding); GO:0098542 (defense response to other organism)
KEGG	-
Pfam	PF00931 (NB-ARC); PF23598 (LRR_14)
InterPro	-
eggNOG	-
NR	GeneID:131026509

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cell membrane	细胞膜	0.80000	`XP_057812367.1`
2	Cytosol	细胞质基质	0.40000	`XP_057812368.1`
3	Cytoplasm	细胞质	0.20000	`XP_057812368.1`
4	Nucleus	细胞核	0.00000	`XP_057812367.1`
5	Chromosome	染色体	0.00000	`XP_057812367.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr5:105857`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B108,B51
`Chr5:105862`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C69
`Chr5:105879`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B66,C16
`Chr5:105914`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B12,B2,C61,C9
`Chr5:105926`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B94,C58
`Chr5:105960`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	A1,A23
`Chr5:106016`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B65,C87
`Chr5:106072`	`AGT`	`A`	2bp_deletion	frameshift_variant	7	B103,B134,B59,C28,C34,C52,C81
`Chr5:106073`	`GTA`	`G`	2bp_deletion	frameshift_variant	49	A1,A14,A15,A16,A24,A7,A9,B109,B112,B114,B12,B122,B131,B137,B139,B2,B24,B34,B43,B44,B5,B58,B61,B70,B72,B75,B81,B83,B85,B9,B93,C10,C17,C30,C50,C51,C60,C61,C62,C63,C67,C69,C70,C75,C8,C82,C85,D2,D3
`Chr5:106082`	`A`	`AGT`	2bp_insertion	frameshift_variant	46	A1,A14,A15,A24,A7,A9,B109,B112,B114,B122,B131,B137,B139,B2,B24,B34,B43,B44,B5,B58,B61,B70,B72,B75,B83,B85,B9,B93,C10,C17,C30,C50,C51,C60,C61,C62,C63,C67,C69,C70,C75,C8,C82,C85,D2,D3
`Chr5:106095`	`AT`	`*`	1bp_deletion	CDS_variant	1	B11
`Chr5:106097`	`A`	`AAT`	2bp_insertion	frameshift_variant	8	A14,A24,B34,B56,B65,B72,C60,C67

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057812367.1

904 aa

452

904

NB-ARC

LRR_14

PF00931 NB-ARC 195-359 aa PF23598 LRR_14 570-863 aa

XP_057812368.1

867 aa

434

867

NB-ARC

LRR_14

PF00931 NB-ARC 166-321 aa PF23598 LRR_14 532-823 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057812367.1`	Pfam	`PF00931`	NB-ARC	Domain	195	359	1.6e-26	93.6	NB-ARC domain
`XP_057812367.1`	Pfam	`PF23598`	LRR_14	Repeat	570	863	2.7e-16	60.0	Leucine-rich repeat region
`XP_057812368.1`	Pfam	`PF00931`	NB-ARC	Domain	166	321	1.7e-27	96.8	NB-ARC domain
`XP_057812368.1`	Pfam	`PF23598`	LRR_14	Repeat	532	823	5.7e-16	58.9	Leucine-rich repeat region

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057956384.1
GAATACATGTGTAGAGCTGACTTTGTGCAGAGTAACAATTGCATCTTCAAAATCCTTCAACCACCGCCAACACCACAATCATATTTTCAACGCGCTTGATCAACTGGTTGAAAACATTAATCTTCCGTTGCTTAATTTGTTTCTCGCTCTATAATTATTCTTCCACACGTTAATTTGCCTTCAAAATCATCAATACATCCATTTTACCATTTGCATTATACACATCTTTTCAAAATATTCATTCTTGAATGTGGATGTTT...

XM_057956385.1
ATCAACTGCTCAATCTTCATAATTAATCTTTCGTTGCTTTGTTTGTCGCTCCTATAATTATTCTTCCACACGTTAATTTGCCTTCAAAATCATCAATACATCCATTTTACCATTTTCATTATACACATCTCTTCAAATCATTTACTCAAATTCTTGAATGCTTCTGAAATTGTATCAAAACCAGCTGCCGCCGCCGTTGACTTGCGCCACGAGATCAGGTATAGCAGCAGAGAGCTAAAGATGTATCATTAATTTGTTTC...

CDS

2 records

下载 CDS FASTA

LOC131026509
ATGGCTGCATATGGTGCAGCGGCTTCTCTGAAGAATACGATTCAGCATATTCTACAATCGTCTCGCATTTCTCTCCTTTCCCCCTCTCCACAAATCATATTCTCAGCTGATTATGGTGCAGCCACTTCTCTCAGGAATGAGCTTCAGCGTATTCTACAATTGTTTAGCAGTTCTCTCGTTTCCCCCTCTCCACAAATTTTACTACCTGCCTACGACGAGATGGGTCGATTGCAGAGAGTTCTGCTAGAATTGGACAAGAC...

LOC131026509
ATGGCGGCTTATGGTGCGGCGGCTTCTCTCAAGAATACCATTCAGCATATTCCACAATCATGTCGCATTTCTCTCGATTACCACTCTACACAAATCTTGCAACCTGCCTACGACCAGATGGATCACTTGCAGATAGTTCTGCTAAGATTGGACAACACCAGCTGCAGCAAGATCAGGACGAAGGTGAATGCTGTGGATGAACTCATCAAAGAGGCAGTTTGGGAATTTGAAGATTTACTTGAATCCCATGTCTTACATCA...

Protein

2 records

下载 Protein FASTA

XP_057812367.1
MAAYGAAASLKNTIQHILQSSRISLLSPSPQIIFSADYGAATSLRNELQRILQLFSSSLVSPSPQILLPAYDEMGRLQRVLLELDKTSCSKIRTKVNALDERIKEVVWEFEDLLESHVFHQSLPQLESERDSLSFPVELQSLEHHVDCFVEKIKMMEEEYTYEMENMPEEEGDPISSRIDFGGMIKSKMVGLSDEFQKVRDNLLEDKHYSIIGMAGVGKTTLAKHIFEDPSIRSHFEFRAWVRVGRKCEPNELLRCILAQ...

XP_057812368.1
MAAYGAAASLKNTIQHIPQSCRISLDYHSTQILQPAYDQMDHLQIVLLRLDNTSCSKIRTKVNAVDELIKEAVWEFEDLLESHVLHQILPHLESERHNLSFSVDLQSLQHHVDCFVEMVKMMEEEYIIEMENMAEEEGEPISSRIDFGGIESKMVGLSHEFQKARDNLLEDKSYSIIGMAGVGKTTLAKHIFEDPSIRSHFEFRAWVKVGRKCESYDLLACVLAQVFNVDELLENGENLVDLLKEKLKDEKCLIVFDDVW...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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