Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr05G000027`

染色体: Chr05 坐标: 137701-141067 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr05G000027`
名称	SmilChr05G000027
描述	putative late blight resistance protein homolog R1A-10
染色体 / SeqID	Chr05 / NC_080391.1
坐标与链方向	137701 - 141067 / `+`

ID 对照

NCBI Gene ID	`LOC131026515`
GeneID	`131026515`
locus_tag	`-`
NCBI Name	`LOC131026515`
原始查询	`SmilChr05G000027`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	putative late blight resistance protein homolog R1A-10
产物	putative late blight resistance protein homolog R1A-10
Arabidopsis	`AT5G48620` (AT5G48620) Disease resistance protein (CC-NBS-LRR class) family [Source:NCBI gene (formerly Entrezgene);Acc:834919] identity=25.1; qcov=0.852; evalue=2.92e-23; confidence=low
Rice	`Os11g0633500` - identity=28.1; qcov=0.779; evalue=2.37e-26; confidence=low
GO	GO:0006457 (protein folding); GO:0043014 (alpha-tubulin binding); GO:0043531 (ADP binding); GO:0098542 (defense response to other organism)
KEGG	-
Pfam	PF00931 (NB-ARC); PF23598 (LRR_14)
InterPro	-
eggNOG	-
NR	GeneID:131026515

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cytoplasm	细胞质	1.00000	`XP_057812373.1`
2	Cell membrane	细胞膜	0.80000	`XP_057812374.1`
3	Cytosol	细胞质基质	0.40000	`XP_057812374.1`
4	Nucleus	细胞核	0.20000	`XP_057812373.1`
5	Chromosome	染色体	0.00000	`XP_057812373.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr5:138072`	`GAT`	`G`	2bp_deletion	frameshift_variant	1	B93
`Chr5:138072`	`GAT`	`G`	2bp_deletion	CDS_variant	1	B93
`Chr5:138180`	`G`	`GC`	1bp_insertion	frameshift_variant	3	B31,B42,C59
`Chr5:138180`	`G`	`GC`	1bp_insertion	CDS_variant	3	B31,B42,C59
`Chr5:138231`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	A22,B135,C85
`Chr5:138291`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B139,C32,C68,C78
`Chr5:138331`	`A`	`AAC`	2bp_insertion	frameshift_variant	1	B82
`Chr5:138331`	`A`	`AAC`	2bp_insertion	CDS_variant	1	B82
`Chr5:138332`	`G`	`GCT`	2bp_insertion	frameshift_variant	4	B12,B32,B5,C9
`Chr5:138332`	`G`	`GCT`	2bp_insertion	CDS_variant	4	B12,B32,B5,C9
`Chr5:138333`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B15
`Chr5:138366`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	A2,B101,C14,C37,C41

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057812373.1

469 aa

234

469

LRR_14

PF23598 LRR_14 134-401 aa

XP_057812374.1

439 aa

220

439

NB-ARC

PF00931 NB-ARC 163-331 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057812373.1`	Pfam	`PF23598`	LRR_14	Repeat	134	401	7.1e-20	71.8	Leucine-rich repeat region
`XP_057812374.1`	Pfam	`PF00931`	NB-ARC	Domain	163	331	2.7e-27	96.2	NB-ARC domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057956391.1
GTTTTTGTTCTTAATTAGTAGTATTATTTAGTTATTAAGTGACAAATCTAATCTGTAACAGCAGCCCTAATCCGCAGCGCCGCCAGTTACTTCCTTCATCCATCTTATTCCGGCGACGACCGTACAAACCCAGCTGCTGGCGCCGCCGTCTCTACTCTATCAGAGTTGCTTTTAAGCTTCGTTTTGGAGGAAAATTGCAGAGCTAAGCAAATTTCATTGCAACAATCAATCGTATTCTCAGCTGATAATTTGAGTATGGC...

XM_057956390.1
TTTCCAAGCTATGACTACTTACCCCAACATTTAAAAATGTTTTTTCTCTATATGGGAGCTTTCCCTCCATATGAAAATTGGAATATAGACGCGCTCAAGGATATGTTGAGTGCTGAGGGGTTTCTTCAAGCGATTGCAGAAGGAAGTTTCGAACCTTTATTCATATCATGCTTGGACAATCTTTCTTTGTATCATCATCTTGTTCTCGACACATCACATGAGGATGAATATTGGTATTGGGCGGGAACGTATCGCGTGCA...

CDS

2 records

下载 CDS FASTA

LOC131026515
ATGGCGGCTTTTGGTGCAGCGATGTCTCTCAAGAATACGATTGAGCGTATTCTACAATCGTCTGGCATTTCTCTGGTTTCCCACTCTCCACAAATCCTACAACCTGCCTACCACGAGATGGATCGCTTGAGGACTGCTTTGCTGTTAATTGACATCACCAGCTGCAGCAAGATCAGGACGGAGGTGAATGGTGTGGATGAACGAATCAAAGAGGCAGTTTGGGAATTTGAAGATTTACTCGAATCCCATGTCTTACATCA...

LOC131026515
ATGTTTTTTCTCTATATGGGAGCTTTCCCTCCATATGAAAATTGGAATATAGACGCGCTCAAGGATATGTTGAGTGCTGAGGGGTTTCTTCAAGCGATTGCAGAAGGAAGTTTCGAACCTTTATTCATATCATGCTTGGACAATCTTTCTTTGTATCATCATCTTGTTCTCGACACATCACATGAGGATGAATATTGGTATTGGGCGGGAACGTATCGCGTGCATTCTTGCTGGCAGCACTTTTGTAAGAAAGAAGCTAG...

Protein

2 records

下载 Protein FASTA

XP_057812373.1
MFFLYMGAFPPYENWNIDALKDMLSAEGFLQAIAEGSFEPLFISCLDNLSLYHHLVLDTSHEDEYWYWAGTYRVHSCWQHFCKKEASRIKFMHVLQSCDDVIKDQRRLCAHWNSLFCINQVCDSIKSDCASTARSLLCFGPYHPYPLPIHAMDFKLLRVLFARDVRFYHFPIEISKLVCLQWLGLSCNGDLPASISNLFHLQFLHITRYMTIKKRGFQSYLPVQIWNMQELQCLVIQGRDLPTPNTDEATLNKLDALIGV...

XP_057812374.1
MAAFGAAMSLKNTIERILQSSGISLVSHSPQILQPAYHEMDRLRTALLLIDITSCSKIRTEVNGVDERIKEAVWEFEDLLESHVLHQILPQLESERDNLSFSVDLQSLQHHVDCFVEKMKMMEKEYIIEIKNMAEEEGEPISSRIDIVGVVNSNLLRVGTYHHFEKVRKCLLEENNYETYSIIGMAGVGKTSLAVHIFQDSSIRSHFEFRAWVEVGRKCESNELLRCVLAQVDPNTYHHLTQDDDDEAELVGILKESLKG...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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