当前解析结果
SmilChr05G000037| 统一新 Gene ID | SmilChr05G000037 |
|---|---|
| 名称 | SmilChr05G000037 |
| 描述 | sucrose synthase 7-like |
| 染色体 / SeqID | Chr05 / NC_080391.1 |
| 坐标与链方向 | 166482 - 170355 / + |
| NCBI Gene ID | LOC131026523 |
|---|---|
| GeneID | 131026523 |
| locus_tag | - |
| NCBI Name | LOC131026523 |
| 原始查询 | SmilChr05G000037 |
| 来源 | GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | sucrose synthase 7-like |
| 产物 | sucrose synthase 7-like |
| Arabidopsis | AT1G73370 (SUS6)sucrose synthase 6 [Source:NCBI gene (formerly Entrezgene);Acc:843672] identity=68.4; qcov=0.958; evalue=0; confidence=high |
| Rice | Os04g0249500 (SUS7)- identity=72.8; qcov=0.9; evalue=0; confidence=high |
| GO | GO:0005985 (sucrose metabolic process); GO:0016157 (sucrose synthase activity) |
| KEGG | smil00500 (Starch and sucrose metabolism - Salvia miltiorrhiza (redroot sage)); smil01100 (Metabolic pathways - Salvia miltiorrhiza (redroot sage)); smil01110 (Biosynthesis of secondary metabolites - Salvia miltiorrhiza (redroot sage)) |
| Pfam | PF00534 (Glycos_transf_1); PF00862 (GT-B_Sucrose_synth); PF13692 (Glyco_trans_1_4); PF24861 (SUS_N); PF24862 (SUS_EPBD) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131026523 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cytoplasm | 细胞质 | 0.80000 | XP_057812386.1 |
| 2 | Cytosol | 细胞质基质 | 0.40000 | XP_057812385.1 |
| 3 | Endoplasmic reticulum | 内质网 | 0.40000 | XP_057812385.1 |
| 4 | Nucleus | 细胞核 | 0.00000 | XP_057812386.1 |
| 5 | Chromosome | 染色体 | 0.00000 | XP_057812386.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr5:167003 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | D11 |
Chr5:167224 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B19 |
Chr5:167250 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B101 |
Chr5:167638 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B97 |
Chr5:167769 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B103,B51 |
Chr5:167784 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B106,C21 |
Chr5:167865 |
GTT |
G |
2bp_deletion | frameshift_variant | 59 | A10,A13,A15,A18,A2,A20,B10,B100,B103,B109,B112,B117,B124,B126,B128,B133,B136,B138,B14,B23,B33,B36,B40,B41,B45,B47,B55,B58,B63,B66,B70,B72,B76,B81,B83,B86,B87,B98,C10,C14,C16,C20,C24,C3,C34,C37,C40,C43,C51,C52,C53,C56,C65,C76,C9,D1,D5,D7,D9 |
Chr5:167923 |
G |
GA |
1bp_insertion | frameshift_variant | 95 | A22,A23,A24,A3,A5,A7,B10,B101,B104,B106,B108,B111,B119,B12,B123,B125,B127,B128,B130,B133,B134,B135,B136,B139,B16,B17,B24,B25,B26,B30,B32,B35,B36,B4,B46,B5,B50,B52,B53,B56,B59,B64,B65,B66,B67,B68,B70,B76,B77,B78,B79,B83,B84,B85,B88,B89,B9,B90,B92,B94,B96,B97,C13,C15,C18,C23,C30,C31,C35,C36,C40,C41,C42,C44,C49,C50,C53,C54,C57,C59,C61,C62,C7,C71,C73,C75,C77,C78,C82,C85,C87,D3,D6,D7,D9 |
Chr5:167926 |
C |
T |
EMS_canonical_SNV | stop_gained | 24 | A1,A25,A8,B115,B118,B132,B15,B28,B31,B37,B49,B53,B57,B59,B60,B79,B93,B95,C1,C28,C33,C46,C5,D8 |
Chr5:167952 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B24 |
Chr5:168004 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | D10 |
Chr5:168097 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B122 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057812385.1PF24861
SUS_N 4-116 aa
PF24862
SUS_EPBD 152-239 aa
PF00862
GT-B_Sucrose_synth 262-575 aa
PF00534
Glycos_transf_1 589-757 aa
PF13692
Glyco_trans_1_4 594-748 aa
XP_057812386.1PF24861
SUS_N 4-116 aa
PF24862
SUS_EPBD 152-239 aa
PF00862
GT-B_Sucrose_synth 262-550 aa
PF00534
Glycos_transf_1 564-732 aa
PF13692
Glyco_trans_1_4 569-723 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057812385.1 |
Pfam | PF24861 |
SUS_N | Domain | 4 | 116 | 1.9e-45 | 154.4 | Sucrose synthase N-terminal |
XP_057812385.1 |
Pfam | PF24862 |
SUS_EPBD | Domain | 152 | 239 | 5.7e-29 | 101.1 | Sucrose synthase EPBD domain |
XP_057812385.1 |
Pfam | PF00862 |
GT-B_Sucrose_synth | Domain | 262 | 575 | 4.3e-160 | 532.0 | Sucrose synthase first GT-B domain |
XP_057812385.1 |
Pfam | PF00534 |
Glycos_transf_1 | Domain | 589 | 757 | 9.4e-30 | 104.1 | Glycosyl transferases group 1 |
XP_057812385.1 |
Pfam | PF13692 |
Glyco_trans_1_4 | Domain | 594 | 748 | 1e-12 | 49.2 | Glycosyl transferases group 1 |
XP_057812386.1 |
Pfam | PF24861 |
SUS_N | Domain | 4 | 116 | 1.9e-45 | 154.4 | Sucrose synthase N-terminal |
XP_057812386.1 |
Pfam | PF24862 |
SUS_EPBD | Domain | 152 | 239 | 6.2e-29 | 101.0 | Sucrose synthase EPBD domain |
XP_057812386.1 |
Pfam | PF00862 |
GT-B_Sucrose_synth | Domain | 262 | 550 | 3.1e-165 | 548.8 | Sucrose synthase first GT-B domain |
XP_057812386.1 |
Pfam | PF00534 |
Glycos_transf_1 | Domain | 564 | 732 | 1.1e-29 | 103.9 | Glycosyl transferases group 1 |
XP_057812386.1 |
Pfam | PF13692 |
Glyco_trans_1_4 | Domain | 569 | 723 | 9.9e-13 | 49.3 | Glycosyl transferases group 1 |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
2 records
下载 cDNA FASTA2 records
下载 CDS FASTA2 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。