Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr05G000039`

染色体: Chr05 坐标: 178118-182122 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr05G000039`
名称	SmilChr05G000039
描述	homeobox-leucine zipper protein HDG11-like
染色体 / SeqID	Chr05 / NC_080391.1
坐标与链方向	178118 - 182122 / `-`

ID 对照

NCBI Gene ID	`LOC131026526`
GeneID	`131026526`
locus_tag	`-`
NCBI Name	`LOC131026526`
原始查询	`SmilChr05G000039`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	homeobox-leucine zipper protein HDG11-like
产物	homeobox-leucine zipper protein HDG11-like
Arabidopsis	`AT1G73360` (HDG11) homeodomain GLABROUS 11 [Source:NCBI gene (formerly Entrezgene);Acc:843671] identity=66; qcov=0.987; evalue=0; confidence=high
Rice	`Os06g0208100` (Roc8(t)) - identity=60.9; qcov=1.01; evalue=0; confidence=high
GO	GO:0000981 (DNA-binding transcription factor activity, RNA polymerase II-specific); GO:0003677 (DNA binding); GO:0006355 (regulation of DNA-templated transcription); GO:0008289 (lipid binding)
KEGG	-
Pfam	PF00046 (Homeodomain); PF01852 (START); PF25797 (PDF2_C)
InterPro	-
eggNOG	-
NR	GeneID:131026526

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	1.00000	`XP_057812388.1`
2	Chromosome	染色体	0.00000	`XP_057812388.1`
3	Centromere	着丝粒	0.00000	`XP_057812388.1`
4	Chromatin	染色质	0.00000	`XP_057812388.1`
5	Telomere	端粒	0.00000	`XP_057812388.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr5:178805`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	A15,A19,B56,B96,C79
`Chr5:178877`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	D11
`Chr5:178892`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	A15,A20,B117,B136,B29
`Chr5:178946`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B113
`Chr5:178988`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	A21
`Chr5:179006`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	A11,B122,B125,B61,C26
`Chr5:179486`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B67
`Chr5:179535`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	A24,B137
`Chr5:179633`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B109,B114,B91,D6
`Chr5:180065`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	B10,B100,B118,B135,C78
`Chr5:180101`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	D11
`Chr5:180533`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B109,B114,B91,D6

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057812388.1

741 aa

370

741

Homeodomain

START

PDF2_C

PF00046 Homeodomain 58-113 aa PF01852 START 256-480 aa PF25797 PDF2_C 500-737 aa

XP_057812389.1

708 aa

354

708

Homeodomain

START

PDF2_C

PF00046 Homeodomain 25-80 aa PF01852 START 223-447 aa PF25797 PDF2_C 467-704 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057812388.1`	Pfam	`PF00046`	Homeodomain	Domain	58	113	2.6e-19	69.5	Homeodomain
`XP_057812388.1`	Pfam	`PF01852`	START	Domain	256	480	1.1e-41	143.2	START domain
`XP_057812388.1`	Pfam	`PF25797`	PDF2_C	Domain	500	737	8.4e-104	346.6	PDF2-like, C-terminal domain
`XP_057812389.1`	Pfam	`PF00046`	Homeodomain	Domain	25	80	2.3e-19	69.6	Homeodomain
`XP_057812389.1`	Pfam	`PF01852`	START	Domain	223	447	9.7e-42	143.4	START domain
`XP_057812389.1`	Pfam	`PF25797`	PDF2_C	Domain	467	704	7.6e-104	346.8	PDF2-like, C-terminal domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057956405.1
ACACCTTCCTCTCCCACCCTCCCAATATCTCTCTTCACTCTCATTTCCTTCTCTCCACCAACATCAACAACCTCTCTCTCTCATCTCATATATATATATACTCACACACACACACACTCATACAGATGTGGTGTATCTGTACAGTGGCAAAAAGGAAAGCATGGTTGACCAACGCTTCTCATACTTGACATGCTCCAATTCCACTCCCCAAATTCCATCTCATTTCCCTGACGCCGCCGGCAAACCACCACCACCACCCA...

XM_057956406.1
CTCTCTCTCTCATCTCATATATATATATACTCACACACACACACACTCATACAGATGTGGTGTATCTGTACAGTGGCAAAAAGGAAAGCATGGTTGACCAACGCTTCTCATACTTGACATGCTCCAATTCCACTCCCCAAATTCCATCTCATTTCCCACCCTTCTTTTGCTAGTGACGCCGCCGGCAAACCACCACCACCACCCATGGAGTTCAGCGGCGGCGGCGGCGGCTCCAGCGGCGGCGACGACCACGACCACCC...

CDS

2 records

下载 CDS FASTA

LOC131026526
ATGGTTGACCAACGCTTCTCATACTTGACATGCTCCAATTCCACTCCCCAAATTCCATCTCATTTCCCTGACGCCGCCGGCAAACCACCACCACCACCCATGGAGTTCAGCGGCGGCGGCGGCGGCTCCAGCGGCGGCGACGACCACGACCACCCCGACTCCCACCGCGGCAAGAAGCGCTACCACCGCCACACGGCCCACCAAATCCAGAGACTTGAATCGATGTTCAAAGAGTGTCCTCATCCAGATGAGAAGACGAG...

LOC131026526
ATGGAGTTCAGCGGCGGCGGCGGCGGCTCCAGCGGCGGCGACGACCACGACCACCCCGACTCCCACCGCGGCAAGAAGCGCTACCACCGCCACACGGCCCACCAAATCCAGAGACTTGAATCGATGTTCAAAGAGTGTCCTCATCCAGATGAGAAGACGAGGAATCAGTTGAGCAGGGAGTTGAATTTGCATCCTCGGCAGATCAAATTCTGGTTCCAAAACAGAAGAACTCAGATGAAGGCACAACACGAGAGAGCGGA...

Protein

2 records

下载 Protein FASTA

XP_057812388.1
MVDQRFSYLTCSNSTPQIPSHFPDAAGKPPPPPMEFSGGGGGSSGGDDHDHPDSHRGKKRYHRHTAHQIQRLESMFKECPHPDEKTRNQLSRELNLHPRQIKFWFQNRRTQMKAQHERADNSALRAENDKIRCENIAIREALKNVICPSCGSSPASEDPYFDEQKLRIENAHLKEELDRVSSVAAKYIGRPISQLPPVQPIHISSLDLSMASFGGHGNIAGPSLDLDLDLLRGSSSSLPFPQLTISDMDKSLMADIAANA...

XP_057812389.1
MEFSGGGGGSSGGDDHDHPDSHRGKKRYHRHTAHQIQRLESMFKECPHPDEKTRNQLSRELNLHPRQIKFWFQNRRTQMKAQHERADNSALRAENDKIRCENIAIREALKNVICPSCGSSPASEDPYFDEQKLRIENAHLKEELDRVSSVAAKYIGRPISQLPPVQPIHISSLDLSMASFGGHGNIAGPSLDLDLDLLRGSSSSLPFPQLTISDMDKSLMADIAANAMDELIRLLQSNEPLWIKGGDGRETLNLESYEKV...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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