当前解析结果
SmilChr05G000047| 统一新 Gene ID | SmilChr05G000047 |
|---|---|
| 名称 | SmilChr05G000047 |
| 描述 | putative late blight resistance protein homolog R1B-16 |
| 染色体 / SeqID | Chr05 / NC_080391.1 |
| 坐标与链方向 | 222531 - 225167 / + |
| NCBI Gene ID | LOC131024712 |
|---|---|
| GeneID | 131024712 |
| locus_tag | - |
| NCBI Name | LOC131024712 |
| 原始查询 | SmilChr05G000047 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | putative late blight resistance protein homolog R1B-16 |
| 产物 | putative late blight resistance protein homolog R1B-16 |
| Arabidopsis | AT5G35450 (AT5G35450)Disease resistance protein (CC-NBS-LRR class) family [Source:NCBI gene (formerly Entrezgene);Acc:833508] identity=26.9; qcov=1.03; evalue=1.05e-64; confidence=low |
| Rice | Os11g0633500- identity=31.2; qcov=0.598; evalue=7.31e-65; confidence=low |
| GO | GO:0043531 (ADP binding); GO:0098542 (defense response to other organism) |
| KEGG | - |
| Pfam | PF00931 (NB-ARC); PF13401 (AAA_22); PF23559 (WHD_DRP) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131024712 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cell membrane | 细胞膜 | 0.80000 | XP_057810235.1 |
| 2 | Cytoplasm | 细胞质 | 0.20000 | XP_057810235.1 |
| 3 | Cytosol | 细胞质基质 | 0.20000 | XP_057810235.1 |
| 4 | Nucleus | 细胞核 | 0.00000 | XP_057810235.1 |
| 5 | Chromosome | 染色体 | 0.00000 | XP_057810235.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr5:222585 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C40 |
Chr5:222648 |
AT |
A |
1bp_deletion | frameshift_variant | 9 | B104,B131,B133,B15,B42,B43,B83,C13,C3 |
Chr5:222652 |
A |
AG |
1bp_insertion | frameshift_variant | 9 | B104,B131,B133,B15,B42,B43,B83,C13,C3 |
Chr5:222659 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B131,B133,B35,B83 |
Chr5:222685 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B102,B106,C21 |
Chr5:222693 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B10,B118 |
Chr5:222701 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B100 |
Chr5:222708 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | A5,B1,C24 |
Chr5:222715 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B106,B94,C25,C60 |
Chr5:222724 |
CTA |
C |
2bp_deletion | frameshift_variant | 7 | A1,B11,B2,B71,C19,C62,C7 |
Chr5:222728 |
C |
CAA |
2bp_insertion | frameshift_variant | 6 | A1,B11,B2,B71,C19,C62 |
Chr5:222783 |
C |
T |
EMS_canonical_SNV | stop_gained | 2 | A21,B41 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057810235.1PF00931
NB-ARC 153-322 aa
PF13401
AAA_22 170-260 aa
PF23559
WHD_DRP 407-477 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057810235.1 |
Pfam | PF00931 |
NB-ARC | Domain | 153 | 322 | 5.6e-40 | 137.5 | NB-ARC domain |
XP_057810235.1 |
Pfam | PF13401 |
AAA_22 | Domain | 170 | 260 | 5.8e-07 | 30.6 | AAA domain |
XP_057810235.1 |
Pfam | PF23559 |
WHD_DRP | Domain | 407 | 477 | 1.6e-18 | 67.2 | Disease resistance protein Winged helix domain |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。