Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr05G000062`

染色体: Chr05 坐标: 292507-301400 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr05G000062`
名称	SmilChr05G000062
描述	putative late blight resistance protein homolog R1A-10
染色体 / SeqID	Chr05 / NC_080391.1
坐标与链方向	292507 - 301400 / `+`

ID 对照

NCBI Gene ID	`LOC131026545`
GeneID	`131026545`
locus_tag	`-`
NCBI Name	`LOC131026545`
原始查询	`SmilChr05G000062`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	putative late blight resistance protein homolog R1A-10
产物	putative late blight resistance protein homolog R1A-10
Arabidopsis	`AT5G43470` (RPP8) Disease resistance protein (CC-NBS-LRR class) family [Source:NCBI gene (formerly Entrezgene);Acc:834367] identity=24.9; qcov=1.03; evalue=1.06e-39; confidence=weak
Rice	`Os07g0186500` - identity=27.4; qcov=0.81; evalue=3.08e-37; confidence=low
GO	GO:0043531 (ADP binding); GO:0098542 (defense response to other organism)
KEGG	-
Pfam	PF00931 (NB-ARC); PF23559 (WHD_DRP); PF23598 (LRR_14)
InterPro	-
eggNOG	-
NR	GeneID:131026545

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cell membrane	细胞膜	0.80000	`XP_057812417.1`
2	Cytosol	细胞质基质	0.20000	`XP_057812417.1`
3	Nucleus	细胞核	0.00000	`XP_057812417.1`
4	Chromosome	染色体	0.00000	`XP_057812417.1`
5	Centromere	着丝粒	0.00000	`XP_057812417.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr5:294170`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	B105,B136,B34,C65,C79
`Chr5:294234`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	A20
`Chr5:294269`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B67
`Chr5:294337`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B47,C72
`Chr5:294408`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B105,B34,C65,C79
`Chr5:294409`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B127,B7,B81,C81
`Chr5:294458`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	C32,C68
`Chr5:294478`	`TTC`	`T`	2bp_deletion	frameshift_variant	4	B105,B34,C65,C79
`Chr5:294478`	`TTC`	`T`	2bp_deletion	CDS_variant	4	B105,B34,C65,C79
`Chr5:294545`	`GA`	`G`	1bp_deletion	frameshift_variant	11	B15,B20,B33,B42,B43,B46,B62,B8,B80,C3,C50
`Chr5:294548`	`GAA`	`G`	2bp_deletion	frameshift_variant	15	A1,A14,A21,A7,B1,B128,B138,B140,B49,B7,B71,B88,B91,C56,D1
`Chr5:294669`	`A`	`ATC`	2bp_insertion	frameshift_variant	23	A20,B105,B136,B15,B20,B28,B33,B34,B42,B43,B46,B47,B48,B62,B67,B8,B80,B81,C13,C3,C65,C72,C79

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057812417.1

927 aa

464

927

NB-ARC

WHD_DRP

LRR_14

PF00931 NB-ARC 180-343 aa PF23559 WHD_DRP 427-476 aa PF23598 LRR_14 574-796 aa

XP_057812418.1

869 aa

434

869

NB-ARC

LRR_14

PF00931 NB-ARC 163-330 aa PF23598 LRR_14 536-819 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057812417.1`	Pfam	`PF00931`	NB-ARC	Domain	180	343	1.7e-38	132.6	NB-ARC domain
`XP_057812417.1`	Pfam	`PF23559`	WHD_DRP	Domain	427	476	2.4e-10	41.0	Disease resistance protein Winged helix domain
`XP_057812417.1`	Pfam	`PF23598`	LRR_14	Repeat	574	796	1.4e-15	57.7	Leucine-rich repeat region
`XP_057812418.1`	Pfam	`PF00931`	NB-ARC	Domain	163	330	2.8e-31	109.1	NB-ARC domain
`XP_057812418.1`	Pfam	`PF23598`	LRR_14	Repeat	536	819	4.1e-18	66.0	Leucine-rich repeat region

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

6 records

下载 cDNA FASTA

XR_009102333.1
GATTCTATATTTTCCAGAAAAGGTAAAAAAGTTGTGATAAGTGAAAATTCATCCAAAGAAAAAGCAAGTAAAACATACTCGGTAAATGCAGCAACATCAATCCCCTTTCATCTTTTCTTGGAAAACTGCGCCACTCCCTCCGCCGCCTTCTATAACCCATCGACTTGCAAGTCGCCACCACCCTCTCCGCCGCTCCCGGTGAAGTATCTATAAGTGAAAGAAAGGGAAGGCTCGTCGCAGTTCCGTACTAGCAAAAACCC...

XR_009102334.1
AAGTGAAAATTCATCCAAAGAAAAAGCAAGTAAAACATACTCGGTAAATGCAGCAACATCAATCCCCTTTCATCTTTTCTTGGAAAACTGCGCCACTCCCTCCGCCGCCTTCTATAACCCATCGACTTGCAAGTCGCCACCACCCTCTCCGCCGCTCCCGGTGAAGTATCTATAAGTGAAAGAAAGGGAAGGCTCGTCGCAGTTCCGTACTAGCAAAAACCCAATCGCCACTGCAATTACCAGTTAAAAGTTCTCCTGAA...

CDS

2 records

下载 CDS FASTA

LOC131026545
ATGGCTTATGCTGCTGTTATTTCTTTAATGAACACAATCGAGGGTCTCCGCAATTCTTCTCGTATTTCCTTTGATGTCACCCCTTGTCCAGAAATCATAGAACCTGCTTACGAGGAGCTGAAGTCCTTGCAAGAAATTCTGAAAAGATTGGATGGGAGCAGCAAGAGCAGTATCAGGATGAATGCTTTGGATGCTCAAATCAGAGACGCTGTCTCACAATTTGAAGATAAACTTGAATCCCATATCTCAAATCAGTTTCT...

LOC131026545
ATGGCAGCTTATGGTGCAGCGACTTCTCTCAAGAATACAATTCAGCGTATTCTACAATCGTCTCGCATTTCCCTCGTTTCCCACTCTCCAGAAATCTTACTACCCGCCTATGATGAGATGGATCGCTTGCAGAGAGTTCTGCTATTATTGGACAACACCAGCTACAGCAAGATCAGGACGAAGGTGAATGCTGCGGATGAACGAATCAAAGAAGCAGTTTGGGAATTCGAAGATTTACTTGAATCCAGTATCTTACATCA...

Protein

2 records

下载 Protein FASTA

XP_057812417.1
MAYAAVISLMNTIEGLRNSSRISFDVTPCPEIIEPAYEELKSLQEILKRLDGSSKSSIRMNALDAQIRDAVSQFEDKLESHISNQFLSQSDESIDGDESHPLVVSIDLQDLRLDFCSFVEMAKRMEEEYVDQLINMTEEEEDDDDEVVSSRIDFSGNKLNTKMVGFSDLFGLIKDGIMGDEWFRILAIVGMAGIGKTTLVNEIFQDKMVLSRFERCAWVKVGRKFQLHEIARNILAQVKHPVTDEEISEKGVSLYLKEIL...

XP_057812418.1
MAAYGAATSLKNTIQRILQSSRISLVSHSPEILLPAYDEMDRLQRVLLLLDNTSYSKIRTKVNAADERIKEAVWEFEDLLESSILHHILPQLESRSGGEKDTLSLSVDLQSLQHSVGGFVEMVKMMKVEYVIELESMPEEEGEPISSRIYFGGIKSKMVGLSDHFEKAKDHLLEENNKKPYSIMGMAGVGKTTLAKRIFEDPSIQRHFEFRAWVKVGRKCESDELLRCILAQVDPSSYPVLTQEDVDEEEIVELLRERLK...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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