当前解析结果
SmilChr05G000104| 统一新 Gene ID | SmilChr05G000104 |
|---|---|
| 名称 | SmilChr05G000104 |
| 描述 | chloroplast envelope quinone oxidoreductase homolog |
| 染色体 / SeqID | Chr05 / NC_080391.1 |
| 坐标与链方向 | 640304 - 642439 / - |
| NCBI Gene ID | LOC131026653 |
|---|---|
| GeneID | 131026653 |
| locus_tag | - |
| NCBI Name | LOC131026653 |
| 原始查询 | SmilChr05G000104 |
| 来源 | GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | chloroplast envelope quinone oxidoreductase homolog |
| 产物 | chloroplast envelope quinone oxidoreductase homolog |
| Arabidopsis | AT4G13010 (AT4G13010)Oxidoreductase, zinc-binding dehydrogenase family protein [Source:NCBI gene (formerly Entrezgene);Acc:826914] identity=64.4; qcov=1; evalue=1.03e-142; confidence=high |
| Rice | Os09g0503100- identity=56.2; qcov=1; evalue=1.33e-116; confidence=high |
| GO | GO:0016491 (oxidoreductase activity) |
| KEGG | smil00592 (alpha-Linolenic acid metabolism - Salvia miltiorrhiza (redroot sage)); smil01110 (Biosynthesis of secondary metabolites - Salvia miltiorrhiza (redroot sage)) |
| Pfam | PF00107 (ADH_zinc_N); PF08240 (ADH_N); PF13602 (ADH_zinc_N_2) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131026653 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Endoplasmic reticulum | 内质网 | 0.40000 | XP_057812551.1 |
| 2 | Peroxisome | 过氧化物酶体 | 0.40000 | XP_057812551.1 |
| 3 | Mitochondrion | 线粒体 | 0.20000 | XP_057812551.1 |
| 4 | Chloroplast membrane | 叶绿体膜 | 0.20000 | XP_057812551.1 |
| 5 | Nucleus | 细胞核 | 0.00000 | XP_057812551.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr5:640672 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | C5,C65 |
Chr5:640810 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B33,B69,B99,C87 |
Chr5:640883 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B27 |
Chr5:640911 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B100 |
Chr5:640978 |
TG |
T |
1bp_deletion | frameshift_variant | 1 | B2 |
Chr5:640978 |
TG |
T |
1bp_deletion | CDS_variant | 1 | B2 |
Chr5:640980 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B2 |
Chr5:641017 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | A11,B138,B2,B72 |
Chr5:641018 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | A11,B27,B4 |
Chr5:641071 |
GC |
G |
1bp_deletion | frameshift_variant | 2 | B13,D10 |
Chr5:641071 |
GC |
G |
1bp_deletion | CDS_variant | 2 | B13,D10 |
Chr5:641073 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | A11,B27 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057812551.1PF08240
ADH_N 33-120 aa
PF00107
ADH_zinc_N 174-237 aa
PF13602
ADH_zinc_N_2 205-335 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057812551.1 |
Pfam | PF08240 |
ADH_N | Domain | 33 | 120 | 3.6e-17 | 63.2 | Alcohol dehydrogenase GroES-like domain |
XP_057812551.1 |
Pfam | PF00107 |
ADH_zinc_N | Domain | 174 | 237 | 2.4e-09 | 37.9 | Zinc-binding dehydrogenase |
XP_057812551.1 |
Pfam | PF13602 |
ADH_zinc_N_2 | Domain | 205 | 335 | 1.1e-14 | 56.2 | Zinc-binding dehydrogenase |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。