当前解析结果
SmilChr05G000114| 统一新 Gene ID | SmilChr05G000114 |
|---|---|
| 名称 | SmilChr05G000114 |
| 描述 | uncharacterized SmilChr05G000114 |
| 染色体 / SeqID | Chr05 / NC_080391.1 |
| 坐标与链方向 | 803262 - 807079 / + |
| NCBI Gene ID | LOC131026585 |
|---|---|
| GeneID | 131026585 |
| locus_tag | - |
| NCBI Name | LOC131026585 |
| 原始查询 | SmilChr05G000114 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | hit=Os06g0704400; species=rice; confidence=low |
| 产物 | hit=Os06g0704400; species=rice; confidence=low |
| Arabidopsis | AT1G06740 (MUG3)MuDR family transposase [Source:NCBI gene (formerly Entrezgene);Acc:3766669] identity=24.2; qcov=0.669; evalue=2.66e-60; confidence=weak |
| Rice | Os06g0704400- identity=32.5; qcov=0.825; evalue=1.48e-117; confidence=low |
| GO | GO:0003677 (DNA binding); GO:0008270 (zinc ion binding) |
| KEGG | - |
| Pfam | PF00872 (Transposase_mut); PF03108 (DBD_Tnp_Mut); PF04434 (SWIM); PF10551 (MULE) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131026585 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Nucleus | 细胞核 | 1.00000 | XP_057812465.1 |
| 2 | Chromosome | 染色体 | 0.00000 | XP_057812465.1 |
| 3 | Centromere | 着丝粒 | 0.00000 | XP_057812465.1 |
| 4 | Chromatin | 染色质 | 0.00000 | XP_057812465.1 |
| 5 | Telomere | 端粒 | 0.00000 | XP_057812465.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr5:803502 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B55,B60,B90 |
Chr5:803581 |
G |
A |
EMS_canonical_SNV | stop_gained | 3 | B101,B111,B86 |
Chr5:803581 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B101,B111,B86 |
Chr5:803592 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | C19,C54 |
Chr5:803619 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B101,B111,B12,B86 |
Chr5:803731 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | D4,D6 |
Chr5:803752 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | D10 |
Chr5:803926 |
CT |
C |
1bp_deletion | frameshift_variant | 51 | A13,A15,A19,A24,A4,A7,B10,B102,B119,B134,B14,B19,B33,B34,B4,B45,B47,B48,B53,B63,B64,B67,B68,B69,B70,B71,B73,B81,B9,C12,C13,C14,C15,C17,C3,C41,C42,C48,C52,C57,C59,C61,C62,C70,C76,C79,C84,C85,C87,D5,D8 |
Chr5:803930 |
C |
T |
EMS_canonical_SNV | stop_gained | 7 | A20,A8,B105,B114,C21,C56,C86 |
Chr5:803983 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B56,B96 |
Chr5:804023 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B32 |
Chr5:804047 |
GT |
G |
1bp_deletion | frameshift_variant | 120 | A1,A11,A13,A14,A2,A20,A23,A24,A3,A4,A7,A8,B10,B101,B102,B105,B108,B111,B112,B114,B117,B119,B123,B124,B132,B134,B138,B140,B15,B19,B21,B22,B26,B3,B30,B33,B38,B39,B4,B40,B41,B42,B43,B45,B47,B51,B53,B54,B55,B62,B63,B64,B67,B68,B69,B7,B70,B71,B72,B73,B74,B76,B79,B81,B83,B84,B86,B90,B91,B92,B94,B95,B96,B99,C1,C12,C14,C15,C16,C17,C20,C21,C27,C28,C3,C31,C33,C34,C36,C37,C38,C4,C40,C41,C42,C43,C45,C48,C50,C52,C56,C57,C59,C60,C61,C62,C63,C67,C74,C76,C77,C79,C81,C84,C85,C87,D11,D2,D5,D7 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057812465.1PF03108
DBD_Tnp_Mut 205-266 aa
PF10551
MULE 401-496 aa
PF00872
Transposase_mut 431-502 aa
PF04434
SWIM 639-674 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057812465.1 |
Pfam | PF03108 |
DBD_Tnp_Mut | Family | 205 | 266 | 2.6e-12 | 46.9 | MuDR family transposase |
XP_057812465.1 |
Pfam | PF10551 |
MULE | Domain | 401 | 496 | 2.4e-17 | 63.8 | MULE transposase domain |
XP_057812465.1 |
Pfam | PF00872 |
Transposase_mut | Family | 431 | 502 | 8.7e-05 | 22.3 | Transposase, Mutator family |
XP_057812465.1 |
Pfam | PF04434 |
SWIM | Domain | 639 | 674 | 1.2e-07 | 31.8 | SWIM zinc finger |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。