当前解析结果
SmilChr05G000134| 统一新 Gene ID | SmilChr05G000134 |
|---|---|
| 名称 | SmilChr05G000134 |
| 描述 | salt tolerance receptor-like cytoplasmic kinase 1 |
| 染色体 / SeqID | Chr05 / NC_080391.1 |
| 坐标与链方向 | 1084174 - 1086413 / + |
| NCBI Gene ID | LOC131026652 |
|---|---|
| GeneID | 131026652 |
| locus_tag | - |
| NCBI Name | LOC131026652 |
| 原始查询 | SmilChr05G000134 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | salt tolerance receptor-like cytoplasmic kinase 1 |
| 产物 | salt tolerance receptor-like cytoplasmic kinase 1 |
| Arabidopsis | AT1G33260 (AT1G33260)Protein kinase superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:840220] identity=47.5; qcov=0.918; evalue=1.91e-97; confidence=high |
| Rice | Os02g0648100 (OsRLCK79)- identity=51.6; qcov=0.901; evalue=2.3e-99; confidence=high |
| GO | GO:0004672 (protein kinase activity); GO:0005524 (ATP binding); GO:0005886 (plasma membrane); GO:0006468 (protein phosphorylation) |
| KEGG | - |
| Pfam | PF00069 (Pkinase); PF07714 (PK_Tyr_Ser-Thr) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131026652 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cell membrane | 细胞膜 | 1.00000 | XP_057812550.1 |
| 2 | Cytosol | 细胞质基质 | 0.40000 | XP_057812550.1 |
| 3 | Nucleus | 细胞核 | 0.00000 | XP_057812550.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057812550.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057812550.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr5:1084486 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | A2,C52 |
Chr5:1084515 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | A1,B33,C8,C84 |
Chr5:1084560 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | C42,C77 |
Chr5:1084569 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B14 |
Chr5:1085818 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | A2,B122 |
Chr5:1085838 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B122 |
Chr5:1085890 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | D10 |
Chr5:1085931 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B114 |
Chr5:1085978 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | A2,B122 |
Chr5:1085982 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B137 |
Chr5:1085984 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B63 |
Chr5:1086003 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B63 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。
XP_057812550.1PF07714
PK_Tyr_Ser-Thr 58-325 aa
PF00069
Pkinase 60-327 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057812550.1 |
Pfam | PF07714 |
PK_Tyr_Ser-Thr | Domain | 58 | 325 | 8.3e-36 | 124.3 | Protein tyrosine and serine/threonine kinase |
XP_057812550.1 |
Pfam | PF00069 |
Pkinase | Domain | 60 | 327 | 1.6e-40 | 139.9 | Protein kinase domain |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。