当前解析结果
SmilChr05G000137| 统一新 Gene ID | SmilChr05G000137 |
|---|---|
| 名称 | SmilChr05G000137 |
| 描述 | terpineol synthase, chloroplastic-like |
| 染色体 / SeqID | Chr05 / NC_080391.1 |
| 坐标与链方向 | 1099003 - 1104243 / - |
| NCBI Gene ID | LOC131026618 |
|---|---|
| GeneID | 131026618 |
| locus_tag | - |
| NCBI Name | LOC131026618 |
| 原始查询 | SmilChr05G000137 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | terpineol synthase, chloroplastic-like |
| 产物 | terpineol synthase%2C chloroplastic-like |
| Arabidopsis | AT3G25810 (AT3G25810)Terpenoid cyclases/Protein prenyltransferases superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:822173] identity=43.6; qcov=1.03; evalue=1.52e-159; confidence=medium |
| Rice | Os03g0347900- identity=32.6; qcov=0.829; evalue=1.4e-75; confidence=low |
| GO | GO:0000287 (magnesium ion binding); GO:0010333 (terpene synthase activity); GO:0016102 (diterpenoid biosynthetic process) |
| KEGG | - |
| Pfam | PF01397 (Terpene_synth); PF03936 (Terpene_synth_C); PF19086 (Terpene_syn_C_2) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131026618 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Chloroplast | 叶绿体 | 0.80000 | XP_057812514.1 |
| 2 | Cytosol | 细胞质基质 | 0.20000 | XP_057812514.1 |
| 3 | Chloroplast stroma | 叶绿体基质 | 0.20000 | XP_057812514.1 |
| 4 | Nucleus | 细胞核 | 0.00000 | XP_057812514.1 |
| 5 | Chromosome | 染色体 | 0.00000 | XP_057812514.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr5:1099242 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B91 |
Chr5:1099260 |
TG |
T |
1bp_deletion | frameshift_variant | 1 | B108 |
Chr5:1099260 |
TG |
T |
1bp_deletion | CDS_variant | 1 | B108 |
Chr5:1099266 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | A3,B105,B136 |
Chr5:1099355 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | A6,B113,B34,C46,D10 |
Chr5:1099447 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B130 |
Chr5:1100632 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B130 |
Chr5:1100701 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B14,B33 |
Chr5:1100724 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B56,B96 |
Chr5:1100752 |
T |
TAC |
2bp_insertion | frameshift_variant | 10 | B121,B122,B125,B56,B57,B61,B67,C64,C66,C86 |
Chr5:1100756 |
CAT |
C |
2bp_deletion | frameshift_variant | 10 | B121,B122,B125,B56,B57,B61,B67,C64,C66,C86 |
Chr5:1100878 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B138 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057812514.1PF01397
Terpene_synth 62-233 aa
PF03936
Terpene_synth_C 290-528 aa
PF19086
Terpene_syn_C_2 330-528 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057812514.1 |
Pfam | PF01397 |
Terpene_synth | Repeat | 62 | 233 | 1.3e-45 | 156.1 | Terpene synthase, N-terminal domain |
XP_057812514.1 |
Pfam | PF03936 |
Terpene_synth_C | Domain | 290 | 528 | 2.9e-89 | 299.2 | Terpene synthase family, metal binding domain |
XP_057812514.1 |
Pfam | PF19086 |
Terpene_syn_C_2 | Domain | 330 | 528 | 4.8e-56 | 190.4 | Terpene synthase family 2, C-terminal metal binding |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。