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调控/突变
TF 结合位点 TF 靶基因 EMS 突变
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中文 EN

Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。
示例

当前解析结果

SmilChr05G000141

染色体: Chr05 坐标: 1131390-1140649 链方向: - 类型: protein_coding

基本信息

统一新 Gene IDSmilChr05G000141
名称SmilChr05G000141
描述MADS-box protein SVP-like
染色体 / SeqIDChr05 / NC_080391.1
坐标与链方向1131390 - 1140649 / -

ID 对照

NCBI Gene IDLOC130984920
GeneID130984920
locus_tag-
NCBI NameLOC130984920
原始查询SmilChr05G000141

查看完整 ID 对照表

功能注释

来源GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述MADS-box protein SVP-like
产物MADS-box protein SVP-like
ArabidopsisAT2G22540 (SVP)
K-box region and MADS-box transcription factor family protein [Source:NCBI gene (formerly Entrezgene);Acc:816787]
identity=42.7; qcov=1.16; evalue=9.5e-55; confidence=medium
RiceOs03g0186600 (OsMADS47)
-
identity=42; qcov=1.11; evalue=6.31e-48; confidence=medium
GOGO:0000978 (RNA polymerase II cis-regulatory region sequence-specific DNA binding); GO:0000981 (DNA-binding transcription factor activity, RNA polymerase II-specific); GO:0005634 (nucleus); GO:0045944 (positive regulation of transcription by RNA polymerase II); GO:0046983 (protein dimerization activity)
KEGG-
PfamPF00319 (SRF-TF); PF01486 (K-box)
InterPro-
eggNOG-
NRGeneID:130984920

打开注释模块

亚细胞定位 Top 5

Rank定位位置中文ScoreProtein ID
1 Nucleus 细胞核 1.00000 XP_057763603.1
2 Chromosome 染色体 0.00000 XP_057763603.1
3 Centromere 着丝粒 0.00000 XP_057763603.1
4 Chromatin 染色质 0.00000 XP_057763603.1
5 Telomere 端粒 0.00000 XP_057763603.1

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置 REF ALT 类型 影响 携带材料数 材料
Chr5:1131512 G A EMS_canonical_SNV CDS_variant 1 B49
Chr5:1131525 C T EMS_canonical_SNV CDS_variant 5 B121,B47,C32,C44,C68
Chr5:1131549 C CAT 2bp_insertion frameshift_variant 142 A1,A10,A11,A16,A18,A2,A24,A4,A6,A7,B10,B102,B103,B104,B105,B107,B108,B109,B11,B110,B112,B119,B12,B120,B122,B123,B124,B126,B127,B128,B13,B130,B133,B134,B136,B137,B14,B15,B17,B19,B2,B21,B22,B23,B24,B25,B26,B27,B29,B3,B30,B31,B32,B33,B34,B35,B36,B4,B44,B45,B47,B49,B52,B54,B6,B60,B62,B65,B7,B73,B74,B76,B78,B79,B8,B80,B81,B82,B85,B86,B87,B9,B90,B92,B93,B97,B98,C10,C12,C14,C16,C18,C19,C2,C20,C22,C23,C24,C25,C26,C29,C3,C30,C31,C41,C43,C47,C5,C50,C51,C53,C54,C55,C56,C58,C6,C60,C63,C64,C66,C67,C70,C71,C72,C73,C74,C76,C77,C79,C8,C80,C81,C85,C9,D10,D2,D3,D4,D5,D6,D7,D9
Chr5:1131559 G A EMS_canonical_SNV CDS_variant 4 B10,B17,B87,D4
Chr5:1134170 TTC T 2bp_deletion frameshift_variant 16 A11,B115,B127,B136,B139,B34,B35,B41,B42,B43,C39,C55,C61,C72,C83,D1
Chr5:1134180 C T EMS_canonical_SNV CDS_variant 2 B132,C39
Chr5:1135151 G A EMS_canonical_SNV CDS_variant 3 C32,C44,C68
Chr5:1135181 G A EMS_canonical_SNV stop_gained 121 A10,A11,A16,A18,A2,A23,A24,A25,A4,A5,B102,B105,B108,B11,B111,B112,B119,B12,B120,B122,B127,B128,B130,B131,B132,B133,B134,B137,B14,B17,B18,B19,B2,B21,B22,B23,B24,B25,B26,B27,B29,B3,B30,B31,B32,B35,B36,B4,B47,B48,B49,B5,B50,B52,B55,B56,B57,B60,B62,B64,B65,B67,B7,B71,B74,B77,B79,B8,B82,B85,B88,B90,B91,B92,B93,B95,B96,B98,C1,C10,C12,C14,C16,C17,C18,C19,C2,C22,C23,C24,C26,C31,C36,C41,C44,C46,C47,C49,C5,C50,C51,C53,C55,C56,C58,C60,C62,C72,C73,C74,C76,C77,C79,C82,C85,C9,D10,D2,D3,D5,D7
Chr5:1135350 C CT 1bp_insertion frameshift_variant 4 A2,B140,C32,C68
Chr5:1135350 C CT 1bp_insertion CDS_variant 4 A2,B140,C32,C68
Chr5:1135367 C CT 1bp_insertion frameshift_variant 19 B1,B11,B118,B139,B14,B2,B45,B65,B70,B81,B86,C40,C42,C45,C52,C62,C65,C7,C71
Chr5:1135388 C T EMS_canonical_SNV stop_gained 64 A13,A14,A20,A9,B10,B101,B102,B104,B105,B109,B112,B115,B119,B123,B124,B125,B129,B135,B17,B26,B27,B30,B41,B5,B51,B54,B59,B60,B62,B67,B69,B70,B74,B75,B82,B83,B84,B88,B89,B90,B92,C10,C11,C14,C26,C28,C30,C35,C36,C37,C42,C48,C52,C57,C59,C6,C69,C79,C8,C80,C84,D4,D6,D9

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057763603.1
232 aa
N
1
116
232
SRF-TF
K-box
C
PF00319 SRF-TF 10-57 aa PF01486 K-box 94-177 aa
XP_057763604.1
232 aa
N
1
116
232
SRF-TF
K-box
C
PF00319 SRF-TF 10-57 aa PF01486 K-box 94-177 aa
XP_057763605.1
226 aa
N
1
113
226
SRF-TF
K-box
C
PF00319 SRF-TF 10-57 aa PF01486 K-box 94-177 aa
XP_057763606.1
226 aa
N
1
113
226
SRF-TF
K-box
C
PF00319 SRF-TF 10-57 aa PF01486 K-box 94-177 aa
XP_057763607.1
224 aa
N
1
112
224
SRF-TF
K-box
C
PF00319 SRF-TF 10-57 aa PF01486 K-box 94-177 aa
XP_057763608.1
220 aa
N
1
110
220
SRF-TF
K-box
C
PF00319 SRF-TF 10-57 aa PF01486 K-box 87-173 aa
XP_057763609.1
220 aa
N
1
110
220
SRF-TF
K-box
C
PF00319 SRF-TF 10-57 aa PF01486 K-box 87-173 aa
XP_057763610.1
214 aa
N
1
107
214
SRF-TF
K-box
C
PF00319 SRF-TF 10-57 aa PF01486 K-box 94-177 aa
XP_057763611.1
214 aa
N
1
107
214
SRF-TF
K-box
C
PF00319 SRF-TF 10-57 aa PF01486 K-box 94-177 aa
XP_057763612.1
212 aa
N
1
106
212
SRF-TF
K-box
C
PF00319 SRF-TF 10-57 aa PF01486 K-box 94-177 aa
XP_057763613.1
212 aa
N
1
106
212
SRF-TF
K-box
C
PF00319 SRF-TF 10-57 aa PF01486 K-box 94-177 aa
XP_057763614.1
210 aa
N
1
105
210
SRF-TF
K-box
C
PF00319 SRF-TF 10-57 aa PF01486 K-box 87-173 aa
XP_057763615.1
210 aa
N
1
105
210
SRF-TF
K-box
C
PF00319 SRF-TF 10-57 aa PF01486 K-box 87-173 aa
XP_057763616.1
208 aa
N
1
104
208
SRF-TF
K-box
C
PF00319 SRF-TF 10-57 aa PF01486 K-box 87-173 aa
XP_057763617.1
208 aa
N
1
104
208
SRF-TF
K-box
C
PF00319 SRF-TF 10-57 aa PF01486 K-box 87-173 aa
Protein ID 来源 结构域编号 结构域名称 类型 起始 aa 终止 aa E-value Score 说明
XP_057763603.1 Pfam PF00319 SRF-TF Domain 10 57 3e-24 84.9 SRF-type transcription factor (DNA-binding and dimerisation domain)
XP_057763603.1 Pfam PF01486 K-box Family 94 177 1.1e-15 58.3 K-box region
XP_057763604.1 Pfam PF00319 SRF-TF Domain 10 57 3e-24 84.9 SRF-type transcription factor (DNA-binding and dimerisation domain)
XP_057763604.1 Pfam PF01486 K-box Family 94 177 1.1e-15 58.3 K-box region
XP_057763605.1 Pfam PF00319 SRF-TF Domain 10 57 2.8e-24 85.0 SRF-type transcription factor (DNA-binding and dimerisation domain)
XP_057763605.1 Pfam PF01486 K-box Family 94 177 1.1e-15 58.2 K-box region
XP_057763606.1 Pfam PF00319 SRF-TF Domain 10 57 2.8e-24 85.0 SRF-type transcription factor (DNA-binding and dimerisation domain)
XP_057763606.1 Pfam PF01486 K-box Family 94 177 1.1e-15 58.2 K-box region
XP_057763607.1 Pfam PF00319 SRF-TF Domain 10 57 2.9e-24 85.0 SRF-type transcription factor (DNA-binding and dimerisation domain)
XP_057763607.1 Pfam PF01486 K-box Family 94 177 1e-15 58.4 K-box region
XP_057763608.1 Pfam PF00319 SRF-TF Domain 10 57 2.8e-24 85.0 SRF-type transcription factor (DNA-binding and dimerisation domain)
XP_057763608.1 Pfam PF01486 K-box Family 87 173 6.6e-16 59.0 K-box region
XP_057763609.1 Pfam PF00319 SRF-TF Domain 10 57 2.8e-24 85.0 SRF-type transcription factor (DNA-binding and dimerisation domain)
XP_057763609.1 Pfam PF01486 K-box Family 87 173 6.6e-16 59.0 K-box region
XP_057763610.1 Pfam PF00319 SRF-TF Domain 10 57 2.4e-24 85.2 SRF-type transcription factor (DNA-binding and dimerisation domain)
XP_057763610.1 Pfam PF01486 K-box Family 94 177 9.4e-16 58.5 K-box region
XP_057763611.1 Pfam PF00319 SRF-TF Domain 10 57 2.4e-24 85.2 SRF-type transcription factor (DNA-binding and dimerisation domain)
XP_057763611.1 Pfam PF01486 K-box Family 94 177 9.4e-16 58.5 K-box region
XP_057763612.1 Pfam PF00319 SRF-TF Domain 10 57 2.6e-24 85.1 SRF-type transcription factor (DNA-binding and dimerisation domain)
XP_057763612.1 Pfam PF01486 K-box Family 94 177 9.7e-16 58.4 K-box region
XP_057763613.1 Pfam PF00319 SRF-TF Domain 10 57 2.6e-24 85.1 SRF-type transcription factor (DNA-binding and dimerisation domain)
XP_057763613.1 Pfam PF01486 K-box Family 94 177 9.7e-16 58.4 K-box region
XP_057763614.1 Pfam PF00319 SRF-TF Domain 10 57 2.4e-24 85.2 SRF-type transcription factor (DNA-binding and dimerisation domain)
XP_057763614.1 Pfam PF01486 K-box Family 87 173 6.6e-16 59.0 K-box region
XP_057763615.1 Pfam PF00319 SRF-TF Domain 10 57 2.4e-24 85.2 SRF-type transcription factor (DNA-binding and dimerisation domain)
XP_057763615.1 Pfam PF01486 K-box Family 87 173 6.6e-16 59.0 K-box region
XP_057763616.1 Pfam PF00319 SRF-TF Domain 10 57 2.6e-24 85.1 SRF-type transcription factor (DNA-binding and dimerisation domain)
XP_057763616.1 Pfam PF01486 K-box Family 87 173 6.2e-16 59.0 K-box region
XP_057763617.1 Pfam PF00319 SRF-TF Domain 10 57 2.6e-24 85.1 SRF-type transcription factor (DNA-binding and dimerisation domain)
XP_057763617.1 Pfam PF01486 K-box Family 87 173 6.2e-16 59.0 K-box region

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

15 records

下载 cDNA FASTA
XM_057907624.1
AATTTCCACCCCTTGCGTCAAACCCCACATCATATGTATATATTGGCTGTTCAAACACTGATAATCAGATTTGCTTTTGCTTCTCTCTCTCTCTCTCTCTCTCTCTCTAGGGTTGGTGGCTTTGGCAGTTTGGCTTCCTCTTCTGCAGGAAGATGGTGAGGCAGAAGATTCAGATAAAGAAGATCGATAACTTGTCGACGAGGCAGGTGACTTTCTCGAAGAGGAGAAGAGGGCTTTTCAAGAAAGCTCAAGAGCTCGCC...
XM_057907625.1
AATTTCCACCCCTTGCGTCAAACCCCACATCATATGTATATATTGGCTGTTCAAACACTGATAATCAGATTTGCTTTTGCTTCTCTCTCTCTCTCTCTCTCTCTCTCTAGGGTTGGTGGCTTTGGCAGTTTGGCTTCCTCTTCTGCAGGAAGATGGTGAGGCAGAAGATTCAGATAAAGAAGATCGATAACTTGTCGACGAGGCAGGTGACTTTCTCGAAGAGGAGAAGAGGGCTTTTCAAGAAAGCTCAAGAGCTCGCC...

CDS

15 records

下载 CDS FASTA
LOC130984920
ATGGTGAGGCAGAAGATTCAGATAAAGAAGATCGATAACTTGTCGACGAGGCAGGTGACTTTCTCGAAGAGGAGAAGAGGGCTTTTCAAGAAAGCTCAAGAGCTCGCCACTCTCTGCGATGCTGAGATTGCTCTCATTGTTTTCTCAGCCACCGGCAAGCTCTTCGACTACTCCAGCTCTAGCATGATGCAAATCATCCAAAGGCTTAAGAAGCTGCAATCTGAGGGTAGCTACAGCAACAGACACCGGCAAACTCTCAA...
LOC130984920
ATGGTGAGGCAGAAGATTCAGATAAAGAAGATCGATAACTTGTCGACGAGGCAGGTGACTTTCTCGAAGAGGAGAAGAGGGCTTTTCAAGAAAGCTCAAGAGCTCGCCACTCTCTGCGATGCTGAGATTGCTCTCATTGTTTTCTCAGCCACCGGCAAGCTCTTCGACTACTCCAGCTCTAGCATGATGCAAATCATCCAAAGGCTTAAGAAGCTGCAATCTGAGGGTAGCTACAGCAACAGACACCGGCAAACTCTCAA...

Protein

15 records

下载 Protein FASTA
XP_057763603.1
MVRQKIQIKKIDNLSTRQVTFSKRRRGLFKKAQELATLCDAEIALIVFSATGKLFDYSSSSMMQIIQRLKKLQSEGSYSNRHRQTLNNQQSNFQAGGDNYDAINKEFTSLTLELRQLNGEDLQGLGLNELARLERVVELALGRVGKTKNDMLMNEISKHKRREIELSEENATLKQQAEVYLYIYIYACKLSQISIAKSCLIRLLIQLFKLCVYIRVSWQLNSWNKGFHETRF
XP_057763604.1
MVRQKIQIKKIDNLSTRQVTFSKRRRGLFKKAQELATLCDAEIALIVFSATGKLFDYSSSSMMQIIQRLKKLQSEGSYSNRHRQTLNNQQSNFQAGGDNYDAINKEFTSLTLELRQLNGEDLQGLGLNELARLERVVELALGRVGKTKNDMLMNEISKHKRREIELSEENATLKQQAEVYLYIYIYACKLSQISIAKSCLIRLLIQLFKLCVYIRVSWQLNSWNKGFHETRF

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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