Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr05G000143`

染色体: Chr05 坐标: 1162806-1179835 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr05G000143`
名称	SmilChr05G000143
描述	transcription initiation factor TFIID subunit 1
染色体 / SeqID	Chr05 / NC_080391.1
坐标与链方向	1162806 - 1179835 / `+`

ID 对照

NCBI Gene ID	`LOC131026579`
GeneID	`131026579`
locus_tag	`-`
NCBI Name	`LOC131026579`
原始查询	`SmilChr05G000143`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	transcription initiation factor TFIID subunit 1
产物	transcription initiation factor TFIID subunit 1
Arabidopsis	`AT1G32750` (HAF01) HAC13 protein (HAC13) [Source:NCBI gene (formerly Entrezgene);Acc:840169] identity=51.2; qcov=1.05; evalue=0; confidence=high
Rice	`Os06g0645800` - identity=56; qcov=0.47; evalue=0; confidence=medium
GO	GO:0001091 (RNA polymerase II general transcription initiation factor binding); GO:0004402 (histone acetyltransferase activity); GO:0005669 (transcription factor TFIID complex); GO:0006366 (transcription by RNA polymerase II); GO:0016251 (RNA polymerase II general transcription initiation factor activity); GO:0017025 (TBP-class protein binding); GO:0051123 (RNA polymerase II preinitiation complex assembly)
KEGG	smil03022 (Basal transcription factors - Salvia miltiorrhiza (redroot sage))
Pfam	PF00240 (ubiquitin); PF00439 (Bromodomain); PF09247 (TBP-binding); PF12157 (DUF3591)
InterPro	-
eggNOG	-
NR	GeneID:131026579

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	1.00000	`XP_057812450.1`
2	Nucleoplasm	核质	0.40000	`XP_057812450.1`
3	Chromosome	染色体	0.00000	`XP_057812450.1`
4	Centromere	着丝粒	0.00000	`XP_057812450.1`
5	Chromatin	染色质	0.00000	`XP_057812450.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr5:1162933`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B73
`Chr5:1163195`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B91
`Chr5:1165225`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	A3,B53
`Chr5:1165249`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B30
`Chr5:1165340`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B140
`Chr5:1165345`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B118,B31,C18,C86
`Chr5:1166373`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	A19
`Chr5:1167007`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B26
`Chr5:1167063`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	B10,B87,C32,C44,C68
`Chr5:1167064`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B10,B115,B60
`Chr5:1167071`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	C60,C81
`Chr5:1168083`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C71

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057812450.1

1867 aa

934

1867

TBP-binding

DUF3591

ubiquitin

Bromodomain

PF09247 TBP-binding 26-72 aa PF12157 DUF3591 589-1156 aa PF00240 ubiquitin 674-744 aa PF00439 Bromodomain 1758-1834 aa

XP_057812451.1

1796 aa

898

1796

DUF3591

ubiquitin

Bromodomain

PF12157 DUF3591 518-1085 aa PF00240 ubiquitin 603-673 aa PF00439 Bromodomain 1687-1763 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057812450.1`	Pfam	`PF09247`	TBP-binding	Domain	26	72	1.3e-10	42.1	TATA box-binding protein binding
`XP_057812450.1`	Pfam	`PF12157`	DUF3591	Family	589	1156	1.1e-117	394.2	Protein of unknown function (DUF3591)
`XP_057812450.1`	Pfam	`PF00240`	ubiquitin	Domain	674	744	2.3e-11	44.0	Ubiquitin family
`XP_057812450.1`	Pfam	`PF00439`	Bromodomain	Domain	1758	1834	2e-20	73.2	Bromodomain
`XP_057812451.1`	Pfam	`PF12157`	DUF3591	Family	518	1085	1e-117	394.4	Protein of unknown function (DUF3591)
`XP_057812451.1`	Pfam	`PF00240`	ubiquitin	Domain	603	673	2.1e-11	44.1	Ubiquitin family
`XP_057812451.1`	Pfam	`PF00439`	Bromodomain	Domain	1687	1763	1.9e-20	73.3	Bromodomain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057956467.1
GAGAGGGAGAGAGCAATACAGAATGGAGGGAGACGAAGAAAGAAGCGAAATAGGAAAGCTGAAGACGACGACGGCGACGGTGTAGCAGAGAGAGAGAAGGCTGAAGCTATGGCTCTTTGGGGCGAAGGCGCCTCCCCCATCGGCGCCGCAGCTGAAGACGAGGGCGTGGCCGTCGATGACGAGGATGAGTACGAGGAGGCTGAAGGGGGCAACCGCCTCCTTGGGTTCATGTTCGGGAATGTCGACGGTGCTGGTGATCT...

XM_057956468.1
AGAAATAGACGTATGGAAATCTTTATCACCGCTCAACCATGGTTCTGAATGCTAGATCAGATCTTGGTGGCCCTCACTATGAAATCACTGCAGACACCATCGGACTCTACAGATCAAGATTATGACAGAAAGGCAGAAAACGCTATTGATTATGAAGATATAGATGAGCAATATGAAGGACCAGAGATCCAGTCTGCTACTGAGGAGGACTTTTTGTTACCAAAAAAGGATTTTTTCTCCAAAGAAGTTTCAGTAGCTTC...

CDS

2 records

下载 CDS FASTA

LOC131026579
ATGGCTCTTTGGGGCGAAGGCGCCTCCCCCATCGGCGCCGCAGCTGAAGACGAGGGCGTGGCCGTCGATGACGAGGATGAGTACGAGGAGGCTGAAGGGGGCAACCGCCTCCTTGGGTTCATGTTCGGGAATGTCGACGGTGCTGGTGATCTTGATGTCGATTATCTTGATGAGGACGCGAAGGAGCATCTTTCTGCACTGGCTGACAAGCTTGGTTCTTCCCTAACAGAAATAGACCTCACTATGAAATCACTGCAGAC...

LOC131026579
ATGCTAGATCAGATCTTGGTGGCCCTCACTATGAAATCACTGCAGACACCATCGGACTCTACAGATCAAGATTATGACAGAAAGGCAGAAAACGCTATTGATTATGAAGATATAGATGAGCAATATGAAGGACCAGAGATCCAGTCTGCTACTGAGGAGGACTTTTTGTTACCAAAAAAGGATTTTTTCTCCAAAGAAGTTTCAGTAGCTTCTTTGGATAATAAAAATTCTCTTTTTGATGATGAAAATTATGATGAAGA...

Protein

2 records

下载 Protein FASTA

XP_057812450.1
MALWGEGASPIGAAAEDEGVAVDDEDEYEEAEGGNRLLGFMFGNVDGAGDLDVDYLDEDAKEHLSALADKLGSSLTEIDLTMKSLQTPSDSTDQDYDRKAENAIDYEDIDEQYEGPEIQSATEEDFLLPKKDFFSKEVSVASLDNKNSLFDDENYDEDSDTENQNISGEGHAETQQLSPPGEQDHKHEAIFLEESLPDDDRALERSTDLGDSEEDDSNALDESIDGDMSSLLPVLYVEDGKAILRFSEIFGVKEPVKAAR...

XP_057812451.1
MLDQILVALTMKSLQTPSDSTDQDYDRKAENAIDYEDIDEQYEGPEIQSATEEDFLLPKKDFFSKEVSVASLDNKNSLFDDENYDEDSDTENQNISGEGHAETQQLSPPGEQDHKHEAIFLEESLPDDDRALERSTDLGDSEEDDSNALDESIDGDMSSLLPVLYVEDGKAILRFSEIFGVKEPVKAARKRDRCPIPKEKYKSTDASDIVEEDEEKFMKAPCQDISWMRRYAAKSDAFMLAEKGDTVIPETVGGSGRMTV...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

JBrowse

跳转到基因组浏览器