Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr05G000148`

染色体: Chr05 坐标: 1194552-1211810 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr05G000148`
名称	SmilChr05G000148
描述	putative late blight resistance protein homolog R1B-17
染色体 / SeqID	Chr05 / NC_080391.1
坐标与链方向	1194552 - 1211810 / `-`

ID 对照

NCBI Gene ID	`LOC131026584`
GeneID	`131026584`
locus_tag	`-`
NCBI Name	`LOC131026584`
原始查询	`SmilChr05G000148`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	putative late blight resistance protein homolog R1B-17
产物	putative late blight resistance protein homolog R1B-17
Arabidopsis	`AT5G48620` (AT5G48620) Disease resistance protein (CC-NBS-LRR class) family [Source:NCBI gene (formerly Entrezgene);Acc:834919] identity=26.3; qcov=0.814; evalue=1.47e-24; confidence=low
Rice	`Os11g0633500` - identity=33.3; qcov=0.507; evalue=1.46e-25; confidence=low
GO	GO:0043531 (ADP binding); GO:0098542 (defense response to other organism)
KEGG	-
Pfam	PF00931 (NB-ARC); PF23598 (LRR_14)
InterPro	-
eggNOG	-
NR	GeneID:131026584

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cell membrane	细胞膜	0.80000	`XP_057812460.1`
2	Cytoplasm	细胞质	0.20000	`XP_057812460.1`
3	Cytosol	细胞质基质	0.20000	`XP_057812460.1`
4	Nucleus	细胞核	0.00000	`XP_057812460.1`
5	Chromosome	染色体	0.00000	`XP_057812460.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr5:1194886`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	B10,B87,C32,C44,C68
`Chr5:1194894`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B13
`Chr5:1194925`	`CT`	`C`	1bp_deletion	frameshift_variant	9	A9,B138,B18,B31,B54,B66,B95,B97,D1
`Chr5:1194936`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	A7,B101,B39,C61,C80
`Chr5:1194962`	`A`	`ACG`	2bp_insertion	frameshift_variant	2	A6,D3
`Chr5:1194962`	`A`	`ACG`	2bp_insertion	CDS_variant	2	A6,D3
`Chr5:1195059`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	A24
`Chr5:1195081`	`A`	`AT`	1bp_insertion	frameshift_variant	3	B120,B139,B42
`Chr5:1195081`	`A`	`AT`	1bp_insertion	CDS_variant	3	B120,B139,B42
`Chr5:1195372`	`CA`	`C`	1bp_deletion	frameshift_variant	5	B136,B2,B7,B75,C7
`Chr5:1195372`	`CA`	`C`	1bp_deletion	CDS_variant	5	B136,B2,B7,B75,C7
`Chr5:1195388`	`CG`	`C`	1bp_deletion	frameshift_variant	29	A14,A24,A3,A4,B114,B118,B124,B131,B2,B25,B26,B40,B44,B59,B62,B71,B75,C11,C17,C31,C36,C43,C5,C62,C7,C71,C78,C80,D3

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057812460.1

912 aa

456

912

NB-ARC

LRR_14

PF00931 NB-ARC 207-369 aa PF23598 LRR_14 597-862 aa

XP_057812462.1

868 aa

434

868

NB-ARC

LRR_14

PF00931 NB-ARC 163-325 aa PF23598 LRR_14 553-818 aa

XP_057812463.1

481 aa

240

481

NB-ARC

PF00931 NB-ARC 207-369 aa

XP_057812464.1

467 aa

234

467

NB-ARC

PF00931 NB-ARC 207-369 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057812460.1`	Pfam	`PF00931`	NB-ARC	Domain	207	369	1.6e-26	93.6	NB-ARC domain
`XP_057812460.1`	Pfam	`PF23598`	LRR_14	Repeat	597	862	1.6e-14	54.2	Leucine-rich repeat region
`XP_057812462.1`	Pfam	`PF00931`	NB-ARC	Domain	163	325	1.6e-26	93.6	NB-ARC domain
`XP_057812462.1`	Pfam	`PF23598`	LRR_14	Repeat	553	818	1.3e-14	54.5	Leucine-rich repeat region
`XP_057812463.1`	Pfam	`PF00931`	NB-ARC	Domain	207	369	5e-27	95.3	NB-ARC domain
`XP_057812464.1`	Pfam	`PF00931`	NB-ARC	Domain	207	369	4.6e-27	95.4	NB-ARC domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

5 records

下载 cDNA FASTA

XR_009102346.1
AGCTACCACCGCATGCCAAGATACTTTTATATTGGTATAGATATGAGACATTTTAGGATTAGCTTTATCGGAGTTCGTTTTATTTGACGAAAAGTAGTGGAAACCATATACTATTTGTAAACTTTTTTCATTCTTTTCACATGATTTTTAAAGTGAGCATTCAACGATGCAGGATACATGATGTTGATCTTTAATCTGTGATGTGCTGCATGTCCACACAGCTTTAATGTCGATGCATCATTACAATTTATCATCAATCA...

XM_057956479.1
CCACCACCACCACCACCACAAACTCATATTTCAATCAAGTTATGGCTGCTTATGGTGCAGCGGCTTCTCTCAAGAATACGATTCTGCGTATTCTACAATCGTCTCGCATTTCTCTCGTTTCCCACTCTCCACAAATCTTACAGCCTGTCTACGACGAGATGGATCGCTTGCAGAAAGTTCTACTCAAATTGGATGACACCAGCTGCAGCAAGATCAGGACGGAGGTGAATGCTTTGGATGAACGAATCAAAGAGGCAGTT...

CDS

4 records

下载 CDS FASTA

LOC131026584
ATGTCGATGCATCATTACAATTTATCATCAATCACTTTAAGAATTGCACCTTCAAAATCCTTATCCTTCCACCGCCTACCGCCGTTGCCACCACCACCACCACCACCACCACAATCATATTTCAATCAAGTGATGGCGGCTTATGGTGCGGCGACTTCTCTCAAGAATACGATTCAGCGTATTCTACAATCGTCTCGCATTTCTCTCGTTTCCCACTCTCCACAAATCTTACAGCCTGTCTACGACGAGATGGATCGCTT...

Protein

4 records

下载 Protein FASTA

XP_057812460.1
MSMHHYNLSSITLRIAPSKSLSFHRLPPLPPPPPPPPQSYFNQVMAAYGAATSLKNTIQRILQSSRISLVSHSPQILQPVYDEMDRLQKVLLKLDDTSCSKIRTEVNALDERIKEAVWEFEDLLESHILPQILPQLESERDNLSFSVDLQGLQHHVDCLVEMVKMMEEEYIIEMENMAEEEGEPISSRIDFGGINSKMVGLSEEFQKARDNLLEDKDYSIIGMAGVGKSTLAKHIFEDPSIRSHFDFRAWVKVGRKCEPN...

XP_057812462.1
MAAYGAAASLKNTILRILQSSRISLVSHSPQILQPVYDEMDRLQKVLLKLDDTSCSKIRTEVNALDERIKEAVWEFEDLLESHILPQILPQLESERDNLSFSVDLQGLQHHVDCLVEMVKMMEEEYIIEMENMAEEEGEPISSRIDFGGINSKMVGLSEEFQKARDNLLEDKDYSIIGMAGVGKSTLAKHIFEDPSIRSHFDFRAWVKVGRKCEPNELLRCILAQVDPNAYRRMLAQGDDHDVELVGLLKEKLHDKKCLI...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

JBrowse

跳转到基因组浏览器