Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr05G000160`

染色体: Chr05 坐标: 1277552-1313722 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr05G000160`
名称	SmilChr05G000160
描述	zinc finger CCCH domain-containing protein 6-like
染色体 / SeqID	Chr05 / NC_080391.1
坐标与链方向	1277552 - 1313722 / `-`

ID 对照

NCBI Gene ID	`LOC131026639`
GeneID	`131026639`
locus_tag	`-`
NCBI Name	`LOC131026639`
原始查询	`SmilChr05G000160`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Arabidopsis/Rice homolog
描述	zinc finger CCCH domain-containing protein 6-like
产物	zinc finger CCCH domain-containing protein 6-like
Arabidopsis	`AT1G19860` (AT1G19860) Zinc finger C-x8-C-x5-C-x3-H type family protein [Source:NCBI gene (formerly Entrezgene);Acc:838574] identity=33.7; qcov=1.13; evalue=1.85e-62; confidence=low
Rice	`Os04g0663200` (OsC3H30) - identity=27.1; qcov=1.05; evalue=5.64e-33; confidence=low
GO	GO:0046872 (metal ion binding)
KEGG	-
Pfam	-
InterPro	-
eggNOG	-
NR	GeneID:131026639

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	1.00000	`XP_057812539.1`
2	Nucleoplasm	核质	0.20000	`XP_057812539.1`
3	Chromosome	染色体	0.00000	`XP_057812540.1`
4	Centromere	着丝粒	0.00000	`XP_057812540.1`
5	Chromatin	染色质	0.00000	`XP_057812540.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr5:1277781`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B32,B91,D7
`Chr5:1277787`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C6
`Chr5:1277834`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B55,D9
`Chr5:1277865`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B17,C58,D2
`Chr5:1277920`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C38
`Chr5:1277966`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	A10
`Chr5:1277981`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B140,B18,B21,D10
`Chr5:1277983`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	B27,B68,B7,C52,C81
`Chr5:1278017`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	A11,B19
`Chr5:1278094`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C60
`Chr5:1278121`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	D11
`Chr5:1278126`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B99,C33

进入 EMS 突变库

预测功能结构域

当前发布数据中，此基因没有可展示的 Pfam 结构域命中。

进入结构域查询

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057956557.1
ATAAACATCCAAAAACAAAAACCGCTGGAACCGAAACACACGCTGAATTGGAGAAGAATTTAGGGCTTTCTCTCTCCCTCTCTACATCTATATAAATCACGACGCTTGATTGAATGCGGCGATCGATTTCTACGAAGTAAAGCCTGGGACAATTCTAGGGTTTCATTTTTTCTATTTTGTTTTTCGCGGAAGAGCTTTGCGTAACCGGAAGTCTGGCGATTTGATTGCTAAATAGCTGATTGAATTTATAAGATAAATCT...

XM_057956556.1
ATAAACATCCAAAAACAAAAACCGCTGGAACCGAAACACACGCTGAATTGGAGAAGAATTTAGGGCTTTCTCTCTCCCTCTCTACATCTATATAAATCACGACGCTTGATTGAATGCGGCGATCGATTTCTACGAAGTAAAGCCTGGGACAATTCTAGGGTTTCATTTTTTCTATTTTGTTTTTCGCGGAAGAGCTTTGCGTAACCGGAAGTCTGGCGATTTGATTGCTAAATAGCTGATTGAATTTATAAGATAAATCT...

CDS

2 records

下载 CDS FASTA

LOC131026639
ATGGGGGGATCGCGGAAATCTAAAAGGATTACTTGGGCTGCAGAGGTTAATCTTTGTCAGGTGAGGCTGTTTTCATCTGCAAATCCTCCTTCGGAAGTAGGAATGGCGTCGCGATCGGGTGGTTATGAAGCTGATGAGAGCTTGCCACCAGGCTTTGAAGATATGAAGCCTAAAATTCTCAAGTTGCCTCAGAAAACCTTCAGCAAATGGAGATGCCCTCCAAGATTTGAAGTGAATAGGGAGTGGCAAGTGGTCTCTGG...

LOC131026639
ATGGGGGGATCGCGGAAATCTAAAAGGATTACTTGGGCTGCAGAGGTTAATCTTTGTCAGGTGAGGCTGTTTTCATCAGCAAAACCTCCTTCAGAAGTAGGAATCGCGTCGCGATTGGGTGGTTGTGAAGCTGATGAGAGCTTGCCACCAGGCTTTGAAGATATGAAGCCTAAAATTCTCAAGTTGCCTCAAAAAACCTTCAGCAAATGGAGATGCCCTCCAAGATTTGAAGTGAATAGGGAGTGGCAAGTGGTCTCTGG...

Protein

2 records

下载 Protein FASTA

XP_057812539.1
MGGSRKSKRITWAAEVNLCQVRLFSSAKPPSEVGIASRLGGCEADESLPPGFEDMKPKILKLPQKTFSKWRCPPRFEVNREWQVVSGEESKEIVCENQRERRVLEAIYPQPSAIPPNPRLPVNPQESIGGDHCIPLIPLTPIEDADAALAVADSNPMIPQPAVSSQCSDIAQAALAAVLSNVDRRNLIDTDLLIRILTSPNLVQQLLTTGHAAQETPPIISTQHVPTTETNAGGALLSAPQITKPELTTCCPPDVSSTQS...

XP_057812540.1
MGGSRKSKRITWAAEVNLCQVRLFSSANPPSEVGMASRSGGYEADESLPPGFEDMKPKILKLPQKTFSKWRCPPRFEVNREWQVVSGEESKEVECENQRERRVLEAIYPQPSAIPPNPRLPVNPQESTGGDHCIPLIPLTPIEDADAALAVADSNPMIPQPAVSSQCSDIAQAALAAVRSNVDRRNLIDTDLLIRILTSPNLVQQLLTTGHAAQETPPSISTQHVPTAETNAGGALLSAPQITKPELSTCCPPDVSSAQP...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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