当前解析结果
SmilChr05G000169| 统一新 Gene ID | SmilChr05G000169 |
|---|---|
| 名称 | SmilChr05G000169 |
| 描述 | serine/threonine-protein kinase PEPKR2 |
| 染色体 / SeqID | Chr05 / NC_080391.1 |
| 坐标与链方向 | 1335060 - 1338947 / - |
| NCBI Gene ID | LOC131026629 |
|---|---|
| GeneID | 131026629 |
| locus_tag | - |
| NCBI Name | LOC131026629 |
| 原始查询 | SmilChr05G000169 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | serine/threonine-protein kinase PEPKR2 |
| 产物 | serine/threonine-protein kinase PEPKR2 |
| Arabidopsis | AT1G12680 (PEPKR2)phosphoenolpyruvate carboxylase-related kinase 2 [Source:NCBI gene (formerly Entrezgene);Acc:837824] identity=59.9; qcov=1.02; evalue=0; confidence=high |
| Rice | Os09g0466900 (OsPEPRK2)- identity=62.2; qcov=0.858; evalue=2.39e-169; confidence=high |
| GO | GO:0004683 (calcium/calmodulin-dependent protein kinase activity); GO:0005516 (calmodulin binding); GO:0005524 (ATP binding); GO:0005634 (nucleus); GO:0005737 (cytoplasm); GO:0009931 (calcium-dependent protein serine/threonine kinase activity); GO:0018105 (peptidyl-serine phosphorylation); GO:0035556 (intracellular signal transduction); GO:0046777 (protein autophosphorylation) |
| KEGG | - |
| Pfam | PF00069 (Pkinase); PF03109 (ABC1); PF07714 (PK_Tyr_Ser-Thr) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131026629 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Nucleus | 细胞核 | 1.00000 | XP_057812528.1 |
| 2 | Cytoplasm | 细胞质 | 0.20000 | XP_057812528.1 |
| 3 | Chromosome | 染色体 | 0.00000 | XP_057812528.1 |
| 4 | Centromere | 着丝粒 | 0.00000 | XP_057812528.1 |
| 5 | Chromatin | 染色质 | 0.00000 | XP_057812528.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr5:1335313 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C87 |
Chr5:1335315 |
T |
TTG |
2bp_insertion | frameshift_variant | 14 | A13,B106,B54,B69,B78,B83,C15,C24,C27,C35,C74,C80,D1,D7 |
Chr5:1335317 |
TCC |
T |
2bp_deletion | frameshift_variant | 13 | A13,B106,B54,B69,B78,C15,C24,C27,C35,C74,C80,D1,D7 |
Chr5:1335360 |
TC |
T |
1bp_deletion | frameshift_variant | 12 | A13,B106,B54,B69,B78,C18,C24,C27,C35,C74,C80,D1 |
Chr5:1335364 |
G |
GA |
1bp_insertion | frameshift_variant | 12 | A13,B106,B54,B69,B78,C18,C24,C27,C35,C74,C80,D1 |
Chr5:1335407 |
C |
CT |
1bp_insertion | frameshift_variant | 6 | A3,B36,B53,B60,B72,C2 |
Chr5:1335513 |
CTT |
C |
2bp_deletion | frameshift_variant | 2 | A1,B80 |
Chr5:1335513 |
CTT |
C |
2bp_deletion | CDS_variant | 2 | A1,B80 |
Chr5:1336051 |
C |
CCA |
2bp_insertion | frameshift_variant | 8 | B11,B46,C1,C53,C62,C64,C74,D9 |
Chr5:1336060 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | A15 |
Chr5:1336093 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B38,B39,C13 |
Chr5:1336117 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B111 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057812528.1PF00069
Pkinase 105-353 aa
PF07714
PK_Tyr_Ser-Thr 106-311 aa
PF03109
ABC1 165-249 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057812528.1 |
Pfam | PF00069 |
Pkinase | Domain | 105 | 353 | 8.9e-73 | 245.6 | Protein kinase domain |
XP_057812528.1 |
Pfam | PF07714 |
PK_Tyr_Ser-Thr | Domain | 106 | 311 | 1.7e-32 | 113.4 | Protein tyrosine and serine/threonine kinase |
XP_057812528.1 |
Pfam | PF03109 |
ABC1 | Domain | 165 | 249 | 2.9e-06 | 27.3 | ABC1 atypical kinase-like domain |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。