当前解析结果
SmilChr05G000170| 统一新 Gene ID | SmilChr05G000170 |
|---|---|
| 名称 | SmilChr05G000170 |
| 描述 | pentatricopeptide repeat-containing protein At5g09450, mitochondrial |
| 染色体 / SeqID | Chr05 / NC_080391.1 |
| 坐标与链方向 | 1339915 - 1343339 / - |
| NCBI Gene ID | LOC131026634 |
|---|---|
| GeneID | 131026634 |
| locus_tag | - |
| NCBI Name | LOC131026634 |
| 原始查询 | SmilChr05G000170 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | pentatricopeptide repeat-containing protein At5g09450, mitochondrial |
| 产物 | pentatricopeptide repeat-containing protein At5g09450%2C mitochondrial |
| Arabidopsis | AT5G09450 (AT5G09450)Tetratricopeptide repeat (TPR)-like superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:830804] identity=52.2; qcov=0.998; evalue=2.19e-153; confidence=high |
| Rice | Os04g0450200- identity=48.1; qcov=0.695; evalue=1.64e-98; confidence=high |
| GO | GO:0005515 (protein binding); GO:0005739 (mitochondrion) |
| KEGG | - |
| Pfam | PF01535 (PPR); PF13041 (PPR_2); PF13812 (PPR_3) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131026634 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Mitochondrion | 线粒体 | 1.00000 | XP_057812533.1 |
| 2 | Nucleus | 细胞核 | 0.00000 | XP_057812533.1 |
| 3 | Chromosome | 染色体 | 0.00000 | XP_057812533.1 |
| 4 | Centromere | 着丝粒 | 0.00000 | XP_057812533.1 |
| 5 | Chromatin | 染色质 | 0.00000 | XP_057812533.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr5:1340377 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | A4,B96 |
Chr5:1340417 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B114,B7,C21,D11 |
Chr5:1340530 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B13 |
Chr5:1340680 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B36,C2 |
Chr5:1340899 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B104,B19,C21 |
Chr5:1340953 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | A21,A7,B124,B40,C80 |
Chr5:1341005 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C71 |
Chr5:1341010 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | A5,A6,B140,B66,B67 |
Chr5:1341064 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | A15 |
Chr5:1341091 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B112 |
Chr5:1341128 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | A7,B35,B7,B91 |
Chr5:1341136 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B112 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057812533.1PF01535
PPR 158-186 aa
PF13812
PPR_3 182-236 aa
PF01535
PPR 192-221 aa
PF13041
PPR_2 192-237 aa
PF01535
PPR 227-252 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057812533.1 |
Pfam | PF01535 |
PPR | Repeat | 158 | 186 | 8.5e-13 | 48.3 | PPR repeat |
XP_057812533.1 |
Pfam | PF13812 |
PPR_3 | Repeat | 182 | 236 | 3.9e-16 | 59.6 | Pentatricopeptide repeat domain |
XP_057812533.1 |
Pfam | PF01535 |
PPR | Repeat | 192 | 221 | 8.5e-13 | 48.3 | PPR repeat |
XP_057812533.1 |
Pfam | PF13041 |
PPR_2 | Repeat | 192 | 237 | 1.1e-16 | 61.3 | PPR repeat family |
XP_057812533.1 |
Pfam | PF01535 |
PPR | Repeat | 227 | 252 | 8.5e-13 | 48.3 | PPR repeat |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。