Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr05G000173`

染色体: Chr05 坐标: 1365143-1367873 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr05G000173`
名称	SmilChr05G000173
描述	2-oxoglutarate-dependent dioxygenase 19-like
染色体 / SeqID	Chr05 / NC_080391.1
坐标与链方向	1365143 - 1367873 / `-`

ID 对照

NCBI Gene ID	`LOC131026637`
GeneID	`131026637`
locus_tag	`-`
NCBI Name	`LOC131026637`
原始查询	`SmilChr05G000173`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	2-oxoglutarate-dependent dioxygenase 19-like
产物	2-oxoglutarate-dependent dioxygenase 19-like
Arabidopsis	`AT4G10490` (AT4G10490) 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:826641] identity=38.6; qcov=0.764; evalue=1.09e-61; confidence=medium
Rice	`Os08g0480200` (2ODD19) - identity=44.2; qcov=0.777; evalue=4.69e-88; confidence=medium
GO	-
KEGG	-
Pfam	PF03171 (2OG-FeII_Oxy); PF14226 (DIOX_N)
InterPro	-
eggNOG	-
NR	GeneID:131026637

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cytoplasm	细胞质	1.00000	`XP_057812536.1`
2	Cytosol	细胞质基质	1.00000	`XP_057812536.1`
3	Nucleus	细胞核	0.00000	`XP_057812536.1`
4	Chromosome	染色体	0.00000	`XP_057812536.1`
5	Centromere	着丝粒	0.00000	`XP_057812536.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr5:1365641`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C71
`Chr5:1365666`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B35,B91
`Chr5:1365698`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	A19,B108,B68
`Chr5:1365713`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C9
`Chr5:1365739`	`C`	`CAA`	2bp_insertion	frameshift_variant	17	A10,A4,B105,B4,B45,B48,B51,B73,B96,C23,C29,C30,C4,C43,C48,C54,D10
`Chr5:1365746`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B88
`Chr5:1365760`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	C62,D6
`Chr5:1365763`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	A18,C2
`Chr5:1365764`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B35,B91
`Chr5:1365770`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B100
`Chr5:1365790`	`G`	`GA`	1bp_insertion	frameshift_variant	1	C5
`Chr5:1365790`	`G`	`GA`	1bp_insertion	CDS_variant	1	C5

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057812536.1

390 aa

195

390

DIOX_N

2OG-FeII_Oxy

PF14226 DIOX_N 79-184 aa PF03171 2OG-FeII_Oxy 236-330 aa

XP_057812537.1

390 aa

195

390

DIOX_N

2OG-FeII_Oxy

PF14226 DIOX_N 79-184 aa PF03171 2OG-FeII_Oxy 236-330 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057812536.1`	Pfam	`PF14226`	DIOX_N	Family	79	184	1.2e-24	88.0	non-haem dioxygenase in morphine synthesis N-terminal
`XP_057812536.1`	Pfam	`PF03171`	2OG-FeII_Oxy	Domain	236	330	1.4e-27	96.6	2OG-Fe(II) oxygenase superfamily
`XP_057812537.1`	Pfam	`PF14226`	DIOX_N	Family	79	184	1.2e-24	88.0	non-haem dioxygenase in morphine synthesis N-terminal
`XP_057812537.1`	Pfam	`PF03171`	2OG-FeII_Oxy	Domain	236	330	1.4e-27	96.6	2OG-Fe(II) oxygenase superfamily

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057956554.1
AAAATGAAGCTCATTACCTCTATATATACTTCCCTTACAACTCCCATTTTAACCAAATTACAAGGAAAAAAAAAAGAAATTAAGCTGAAAATGGCATCAATTGTTGCAGCTTCTGATTCGTTTAAGCCCTTTGAATTCGATGCAACCCTAAAAGTTATAGCAGATTCTTCTTCTTTGAAATCGGTCCCTTCAAAATTCAACTTCAGCAATGAGCGCACTGCTTTCACTTCCGACTCACTCCCCACCGTCGATTTCTCAGC...

XM_057956553.1
AAAATGAAGCTCATTACCTCTATATATACTTCCCTTACAACTCCCATTTTAACCAAATTACAAGGAAAAAAAAAAGAAATTAAGCTGAAAATGGCATCAATTGTTGCAGCTTCTGATTCGTTTAAGCCCTTTGAATTCGATGCAACCCTAAAAGTTATAGCAGATTCTTCTTCTTTGAAATCGGTCCCTTCAAAATTCAACTTCAGCAATGAGCGCACTGCTTTCACTTCCGACTCACTCCCCACCGTCGATTTCTCAGC...

CDS

2 records

下载 CDS FASTA

LOC131026637
ATGAAGCTCATTACCTCTATATATACTTCCCTTACAACTCCCATTTTAACCAAATTACAAGGAAAAAAAAAAGAAATTAAGCTGAAAATGGCATCAATTGTTGCAGCTTCTGATTCGTTTAAGCCCTTTGAATTCGATGCAACCCTAAAAGTTATAGCAGATTCTTCTTCTTTGAAATCGGTCCCTTCAAAATTCAACTTCAGCAATGAGCGCACTGCTTTCACTTCCGACTCACTCCCCACCGTCGATTTCTCAGCCCT...

Protein

2 records

下载 Protein FASTA

XP_057812536.1
MKLITSIYTSLTTPILTKLQGKKKEIKLKMASIVAASDSFKPFEFDATLKVIADSSSLKSVPSKFNFSNERTAFTSDSLPTVDFSALIAGDPHQRSKAVDDLAAACREWGFFILVNHGVPESLMEAMFIAVKEFFRLPDSEKKQFEAKSASDPIKCGNFNVANTSNQSFTLWRDYLKLYVHPNFHCPHQPQLLRDAVLEYTQITRKLATTLIEAVCEALELNQRYVDEILKMDSSFQMFATNYYPRCPQPDQAIGIPAHT...

XP_057812537.1
MKLITSIYTSLTTPILTKLQGKKKEIKLKMASIVAASDSFKPFEFDATLKVIADSSSLKSVPSKFNFSNERTAFTSDSLPTVDFSALIAGDPHQRSKAVDDLAAACREWGFFILVNHGVPESLMEAMFIAVKEFFRLPDSEKKQFEAKSASDPIKCGNFNVANTSNQSFTLWRDYLKLYVHPNFHCPHQPQLLRDAVLEYTQITRKLATTLIEAVCEALELNQRYVDEILKMDSSFQMFATNYYPRCPQPDQAIGIPAHT...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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JBrowse

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