当前解析结果
SmilChr05G000183| 统一新 Gene ID | SmilChr05G000183 |
|---|---|
| 名称 | SmilChr05G000183 |
| 描述 | uncharacterized protein At2g39795, mitochondrial-like |
| 染色体 / SeqID | Chr05 / NC_080391.1 |
| 坐标与链方向 | 1464804 - 1467531 / + |
| NCBI Gene ID | LOC130984918 |
|---|---|
| GeneID | 130984918 |
| locus_tag | - |
| NCBI Name | LOC130984918 |
| 原始查询 | SmilChr05G000183 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | Mitochondrial glycoprotein family protein [Source:NCBI gene (formerly Entrezgene);Acc:838157]; symbol=AT1G15870; hit=AT1G15870; species=arabidopsis; confidence=high |
| 产物 | Mitochondrial glycoprotein family protein [Source:NCBI gene (formerly Entrezgene);Acc:838157]; symbol=AT1G15870; hit=AT1G15870; species=arabidopsis; confidence=high |
| Arabidopsis | AT1G15870 (AT1G15870)Mitochondrial glycoprotein family protein [Source:NCBI gene (formerly Entrezgene);Acc:838157] identity=57.6; qcov=0.835; evalue=5.28e-79; confidence=high |
| Rice | Os08g0439900- identity=39.1; qcov=1; evalue=9.19e-46; confidence=medium |
| GO | GO:0005759 (mitochondrial matrix) |
| KEGG | - |
| Pfam | PF02330 (MAM33) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130984918 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Mitochondrion | 线粒体 | 1.00000 | XP_057763601.1 |
| 2 | Mitochondrion matrix | 线粒体基质 | 0.60000 | XP_057763601.1 |
| 3 | Nucleus | 细胞核 | 0.00000 | XP_057763601.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057763601.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057763601.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr5:1465138 |
G |
GAA |
2bp_insertion | frameshift_variant | 17 | A22,B13,B130,B133,B2,B44,B47,B85,C3,C40,C41,C46,C56,C7,C71,C76,C83 |
Chr5:1465139 |
GCC |
G |
2bp_deletion | frameshift_variant | 17 | A22,B13,B130,B133,B2,B44,B47,B85,C3,C40,C41,C46,C56,C7,C71,C76,C83 |
Chr5:1465177 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | D11 |
Chr5:1465272 |
TC |
T |
1bp_deletion | frameshift_variant | 1 | B104 |
Chr5:1465272 |
TC |
T |
1bp_deletion | CDS_variant | 1 | B104 |
Chr5:1465273 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | D11 |
Chr5:1466897 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B78,B98,C42,C45 |
Chr5:1467142 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | C46,C71,C8 |
Chr5:1467172 |
GA |
G |
1bp_deletion | frameshift_variant | 4 | B109,B131,C86,D7 |
Chr5:1467172 |
GA |
G |
1bp_deletion | CDS_variant | 4 | B109,B131,C86,D7 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。
XP_057763601.1PF02330
MAM33 69-240 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057763601.1 |
Pfam | PF02330 |
MAM33 | Domain | 69 | 240 | 5.1e-33 | 115.5 | Mitochondrial glycoprotein |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。