Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr05G000186`

染色体: Chr05 坐标: 1493467-1497706 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr05G000186`
名称	SmilChr05G000186
描述	bifunctional riboflavin biosynthesis protein RIBA 1, chloroplastic
染色体 / SeqID	Chr05 / NC_080391.1
坐标与链方向	1493467 - 1497706 / `-`

ID 对照

NCBI Gene ID	`LOC131026620`
GeneID	`131026620`
locus_tag	`-`
NCBI Name	`LOC131026620`
原始查询	`SmilChr05G000186`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	bifunctional riboflavin biosynthesis protein RIBA 1, chloroplastic
产物	bifunctional riboflavin biosynthesis protein RIBA 1%2C chloroplastic
Arabidopsis	`AT5G64300` (GCH) GTP cyclohydrolase II [Source:NCBI gene (formerly Entrezgene);Acc:836551] identity=79.3; qcov=0.882; evalue=0; confidence=high
Rice	`Os08g0481950` - identity=75.7; qcov=0.864; evalue=0; confidence=high
GO	GO:0003935 (GTP cyclohydrolase II activity); GO:0008686 (3,4-dihydroxy-2-butanone-4-phosphate synthase activity); GO:0009231 (riboflavin biosynthetic process); GO:0009507 (chloroplast)
KEGG	smil00740 (Riboflavin metabolism - Salvia miltiorrhiza (redroot sage)); smil00790 (Folate biosynthesis - Salvia miltiorrhiza (redroot sage)); smil01100 (Metabolic pathways - Salvia miltiorrhiza (redroot sage)); smil01110 (Biosynthesis of secondary metabolites - Salvia miltiorrhiza (redroot sage)); smil01240 (Biosynthesis of cofactors - Salvia miltiorrhiza (redroot sage))
Pfam	PF00925 (GTP_cyclohydro2); PF00926 (DHBP_synthase)
InterPro	-
eggNOG	-
NR	GeneID:131026620

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Chloroplast	叶绿体	1.00000	`XP_057812516.1`
2	Chloroplast stroma	叶绿体基质	1.00000	`XP_057812516.1`
3	Nucleus	细胞核	0.00000	`XP_057812516.1`
4	Chromosome	染色体	0.00000	`XP_057812516.1`
5	Centromere	着丝粒	0.00000	`XP_057812516.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr5:1493845`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B112,B127,B138,B50
`Chr5:1493925`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B101,B135,C80,C84
`Chr5:1494595`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	A18,B98,C82
`Chr5:1494605`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B112,B118,B31,C16
`Chr5:1494607`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	A18,B30,B96,B98,C82
`Chr5:1494903`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C65
`Chr5:1494979`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C16
`Chr5:1495006`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B103,C27,C56
`Chr5:1495243`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	A11,A3,B108,C23,C49
`Chr5:1495314`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C18
`Chr5:1495399`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B101,C80,C84
`Chr5:1495411`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B51,C51

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057812516.1

553 aa

276

553

DHBP_synthase

GTP_cyclohydro2

PF00926 DHBP_synthase 133-325 aa PF00925 GTP_cyclohydro2 337-501 aa

XP_057812517.1

552 aa

276

552

DHBP_synthase

GTP_cyclohydro2

PF00926 DHBP_synthase 132-324 aa PF00925 GTP_cyclohydro2 336-500 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057812516.1`	Pfam	`PF00926`	DHBP_synthase	Family	133	325	5.9e-87	290.9	3,4-dihydroxy-2-butanone 4-phosphate synthase
`XP_057812516.1`	Pfam	`PF00925`	GTP_cyclohydro2	Family	337	501	6.7e-72	241.2	GTP cyclohydrolase II
`XP_057812517.1`	Pfam	`PF00926`	DHBP_synthase	Family	132	324	5.8e-87	290.9	3,4-dihydroxy-2-butanone 4-phosphate synthase
`XP_057812517.1`	Pfam	`PF00925`	GTP_cyclohydro2	Family	336	500	6.6e-72	241.2	GTP cyclohydrolase II

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057956534.1
GATTATATAAATAAAAAATAAAAATAAAGAGTCAAGTCTCCTATTCAAGAATAAACAACCATGCTTATATTCATCTGAAAATCCCCAAATCCACAGTCAAAACATTACGATTTCGCACACGGCGACGGCGGCTCCTTGTTTTTGAAACAATTGACCAAAAACACTGAATCAAATCAAGAAAAGAAAAGTCAAATTGTTATCTTTTCTTTTCCATTTCTTTTTTCGCCCAAGAAAAGTAGGTTTGGGATGGAATCAATACC...

XM_057956533.1
TCCTATTCAAGAATAAACAACCATGCTTATATTCATCTGAAAATCCCCAAATCCACAGTCAAAACATTACGATTTCGCACACGGCGACGGCGGCTCCTTGTTTTTGAAACAATTGACCAAAAACACTGAATCAAATCAAGAAAAGAAAAGTCAAATTGTTATCTTTTCTTTTCCATTTCTTTTTTCGCCCAAGAAAAGTAGGTTTGGGATGGAATCAATACCCAATGGTTGGTGACGCAGTATAAATCACCCGCCGCACC...

CDS

2 records

下载 CDS FASTA

LOC131026620
ATGGCTTCCATGAATTTTTCTTGCCCATCGACTTCGCTTTCTCGCTCTGGTTCCAGACTGTACAGCGGTCTGCTATGCGGAAATATTCAGTATGCGAATGGTGTAGAAGTCTTCAAACGGCCCAGTGCCAAACTCGGTTTGAGTATCAAGGCCAGTGGGAAGATTAAGTCAGCCCTGTTCTCAGCAGAAAATGGCTCTCTTCCACATTCTGCGGGTTCTGATGTTGCAAGTAACGCTCTCGTCAGTGATATATCTGGTGG...

LOC131026620
ATGGCTTCCATGAATTTTTCTTGCCCATCGACTTCGCTTTCTCGCTCTGGCAGTTCCAGACTGTACAGCGGTCTGCTATGCGGAAATATTCAGTATGCGAATGGTGTAGAAGTCTTCAAACGGCCCAGTGCCAAACTCGGTTTGAGTATCAAGGCCAGTGGGAAGATTAAGTCAGCCCTGTTCTCAGCAGAAAATGGCTCTCTTCCACATTCTGCGGGTTCTGATGTTGCAAGTAACGCTCTCGTCAGTGATATATCTGG...

Protein

2 records

下载 Protein FASTA

XP_057812516.1
MASMNFSCPSTSLSRSGSSRLYSGLLCGNIQYANGVEVFKRPSAKLGLSIKASGKIKSALFSAENGSLPHSAGSDVASNALVSDISGGVEVQSDAVVLGALAADMAPTASGFPLESDEFDLDVPSEGFSSIPEAIKDIREGKMVVVVDDEDRENEGDLIMAASKVTPEAMAFFVKYGTGIVCVSMKDEDLERLKLPLMVNHKENEEKLSTAFTVSVDAKHGTTTGVSARDRATTILALASKDSKPEDFNRPGHIFPLKYR...

XP_057812517.1
MASMNFSCPSTSLSRSGSRLYSGLLCGNIQYANGVEVFKRPSAKLGLSIKASGKIKSALFSAENGSLPHSAGSDVASNALVSDISGGVEVQSDAVVLGALAADMAPTASGFPLESDEFDLDVPSEGFSSIPEAIKDIREGKMVVVVDDEDRENEGDLIMAASKVTPEAMAFFVKYGTGIVCVSMKDEDLERLKLPLMVNHKENEEKLSTAFTVSVDAKHGTTTGVSARDRATTILALASKDSKPEDFNRPGHIFPLKYRE...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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