Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr05G000188`

染色体: Chr05 坐标: 1500400-1544249 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr05G000188`
名称	SmilChr05G000188
描述	putative late blight resistance protein homolog R1A-4
染色体 / SeqID	Chr05 / NC_080391.1
坐标与链方向	1500400 - 1544249 / `-`

ID 对照

NCBI Gene ID	`LOC131026596`
GeneID	`131026596`
locus_tag	`-`
NCBI Name	`LOC131026596`
原始查询	`SmilChr05G000188`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	putative late blight resistance protein homolog R1A-4
产物	putative late blight resistance protein homolog R1A-4
Arabidopsis	`AT5G48620` (AT5G48620) Disease resistance protein (CC-NBS-LRR class) family [Source:NCBI gene (formerly Entrezgene);Acc:834919] identity=25.2; qcov=0.912; evalue=7.38e-19; confidence=low
Rice	`Os11g0550100` - identity=33; qcov=0.511; evalue=2.15e-24; confidence=low
GO	GO:0043531 (ADP binding); GO:0098542 (defense response to other organism)
KEGG	-
Pfam	PF00931 (NB-ARC); PF23598 (LRR_14)
InterPro	-
eggNOG	-
NR	GeneID:131026596

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cell membrane	细胞膜	0.80000	`XP_057812484.1`
2	Cytoplasm	细胞质	0.20000	`XP_057812484.1`
3	Cytosol	细胞质基质	0.20000	`XP_057812485.1`
4	Nucleus	细胞核	0.00000	`XP_057812485.1`
5	Chromosome	染色体	0.00000	`XP_057812485.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr5:1500452`	`G`	`GAT`	2bp_insertion	frameshift_variant	3	B51,B71,C23
`Chr5:1500452`	`G`	`GAT`	2bp_insertion	CDS_variant	3	B51,B71,C23
`Chr5:1500455`	`TCC`	`T`	2bp_deletion	frameshift_variant	9	B112,B51,B64,B71,C23,C40,C52,C60,C87
`Chr5:1500491`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	C56,C83
`Chr5:1500492`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	A25
`Chr5:1500519`	`T`	`TCG`	2bp_insertion	frameshift_variant	12	A2,B103,B32,B44,B70,B79,C1,C2,C41,C53,C64,D4
`Chr5:1500585`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	A22,B105,C9,D11
`Chr5:1500590`	`C`	`CAT`	2bp_insertion	stop_gained,frameshift_variant	7	B140,B50,C17,C20,C58,C64,C73
`Chr5:1500591`	`C`	`T`	EMS_canonical_SNV	stop_gained	87	A1,A11,A18,A2,A20,A22,A4,A8,A9,B100,B102,B105,B107,B11,B110,B111,B113,B122,B126,B130,B131,B132,B136,B137,B138,B14,B18,B24,B25,B27,B29,B41,B44,B47,B54,B56,B57,B6,B60,B63,B65,B68,B73,B8,B80,B82,B84,B86,B88,B89,B9,B95,B96,B98,C11,C16,C17,C20,C21,C22,C23,C27,C30,C31,C35,C36,C37,C39,C40,C44,C47,C49,C50,C54,C58,C65,C69,C71,C72,C76,C77,C79,C80,C83,D6,D8,D9
`Chr5:1500603`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B13,B78
`Chr5:1500614`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	A22,B105,B26,B33,C15
`Chr5:1500615`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B14

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057812484.1

867 aa

434

867

NB-ARC

LRR_14

PF00931 NB-ARC 174-325 aa PF23598 LRR_14 553-819 aa

XP_057812485.1

863 aa

432

863

NB-ARC

LRR_14

PF00931 NB-ARC 166-325 aa PF23598 LRR_14 546-813 aa

XP_057812486.1

863 aa

432

863

NB-ARC

LRR_14

PF00931 NB-ARC 166-325 aa PF23598 LRR_14 546-813 aa

XP_057812487.1

409 aa

204

409

NB-ARC

PF00931 NB-ARC 166-325 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057812484.1`	Pfam	`PF00931`	NB-ARC	Domain	174	325	3e-25	89.5	NB-ARC domain
`XP_057812484.1`	Pfam	`PF23598`	LRR_14	Repeat	553	819	1.3e-14	54.5	Leucine-rich repeat region
`XP_057812485.1`	Pfam	`PF00931`	NB-ARC	Domain	166	325	2.9e-24	86.3	NB-ARC domain
`XP_057812485.1`	Pfam	`PF23598`	LRR_14	Repeat	546	813	1.2e-16	61.2	Leucine-rich repeat region
`XP_057812486.1`	Pfam	`PF00931`	NB-ARC	Domain	166	325	2.9e-24	86.3	NB-ARC domain
`XP_057812486.1`	Pfam	`PF23598`	LRR_14	Repeat	546	813	1.2e-16	61.2	Leucine-rich repeat region
`XP_057812487.1`	Pfam	`PF00931`	NB-ARC	Domain	166	325	7.3e-25	88.2	NB-ARC domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

4 records

下载 cDNA FASTA

XM_057956502.1
TGGGCTAGGACCCAATATAATTATATATAGGATATTTTATTATTAGCTTTATTGGCGTGCGTTTTCTTTTACGAAAACTAGTGGAAGCCATGTGTTTTCACACTTCTTTCATAATTTTCAAGTGGTTGATTGCTCATTCTTAATAATTACAATCTTCGGTTGCTTTGTTTCTTGCTACAATTCTTCCACACAATTGCATTCAAAATCATCAATAGATCGATTTTACCATTACATTATACACATCTTTTCAAATCATTTAC...

XM_057956503.1
TGGTTGATTGCTCAATCTTCATAATTTCTTCCACACAATTGCCTTCAAAATCATCAATAGATCGATTTTAGCATTACATTATACACATCTTTTCAAATCATTTACTAAAGTTCTTGAATGTGGCTTTGAATGTTTCTGAAATTGTATCAAAAGCAGCTGCCGCCGCCGTCGAGAGTTTAGTTCAAGCTTCATTTTGGAGGAAAATTGCAGAGCTAAGCAATTTCATTTCAACAATATATCGTATCTCAGCTGATAATTTG...

CDS

4 records

下载 CDS FASTA

LOC131026596
ATGGCGGCTTTTGGTGCGGCGGCTTCTCTCAAGAATACGATTCTGCGTATTCTACACTCGTCTCGCATTTCTCTCGTTTCCCACTCTCCACTAATCTTACAGCCTGTCTACGACGAGATGGATCGCTTGCAGAAAGTTCTGCTAAAATTGGACGAGACCAGCTGCAGCAAGATCAGGACAGAGGTGAATGCTTTGGATGAACTCATAAAAGAGGCAGTTTGGGAATTCGAAGATTTACTCGAATCCCATGTCTTACCTCA...

Protein

4 records

下载 Protein FASTA

XP_057812484.1
MAAFGAAASLKNTILRILQSSRISLVSHSPQIFQPVYDEMDRLQRVLLELDETSCSKIRTKVNAADELIKEAVWEFEDLLESHVLPQILPQLQSERSNLSFSVDLQSLQHHVDCFVEMVKMMEEEYIIEMENMAEEEGEPISSRIDFGGMIKSKMVGLSYEFQWARDNLLQDKHFSICGMAGVGKTTFAKHIFEDPSIRSHFEFRAWVKVGRKCTPNELLRCVLAQVDPNTYRMLAQGDDDDEELVGLLKEKLQDKKCFI...

XP_057812485.1
MAAFGAAASLKNTILRILHSSRISLVSHSPLILQPVYDEMDRLQKVLLKLDETSCSKIRTEVNALDELIKEAVWEFEDLLESHVLPQILPQLQSERHNLSFSVDLQSLQHHVDCFVEMVKMMEEEYTNEMENMAEEEGEPISSRIDFGGIKSKMVGRSYVFQRARDNLLEEKHYSIIGMAGIGKTTIAKHIFEDPSIRSHFEFRAWVKVGRICEPNELLRCVLAQVDPNAYRMLAQGDDDGEELVGLLKEKLQGKKCLIV...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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