当前解析结果
SmilChr05G000192| 统一新 Gene ID | SmilChr05G000192 |
|---|---|
| 名称 | SmilChr05G000192 |
| 描述 | putative late blight resistance protein homolog R1A-10 |
| 染色体 / SeqID | Chr05 / NC_080391.1 |
| 坐标与链方向 | 1529165 - 1533641 / - |
| NCBI Gene ID | LOC131026593 |
|---|---|
| GeneID | 131026593 |
| locus_tag | - |
| NCBI Name | LOC131026593 |
| 原始查询 | SmilChr05G000192 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | putative late blight resistance protein homolog R1A-10 |
| 产物 | putative late blight resistance protein homolog R1A-10 |
| Arabidopsis | AT5G43470 (RPP8)Disease resistance protein (CC-NBS-LRR class) family [Source:NCBI gene (formerly Entrezgene);Acc:834367] identity=23.2; qcov=1.03; evalue=2.95e-35; confidence=weak |
| Rice | Os07g0186500- identity=26.5; qcov=0.649; evalue=1.78e-35; confidence=low |
| GO | GO:0043531 (ADP binding); GO:0098542 (defense response to other organism) |
| KEGG | - |
| Pfam | PF00931 (NB-ARC); PF23598 (LRR_14) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131026593 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cell membrane | 细胞膜 | 0.80000 | XP_057812479.1 |
| 2 | Cytosol | 细胞质基质 | 0.20000 | XP_057812479.1 |
| 3 | Nucleus | 细胞核 | 0.00000 | XP_057812479.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057812479.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057812479.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr5:1530254 |
GA |
G |
1bp_deletion | frameshift_variant | 18 | A1,A14,B107,B117,B120,B18,B23,B33,B65,B97,C47,C49,C62,C63,C73,D11,D4,D6 |
Chr5:1530256 |
CG |
C |
1bp_deletion | frameshift_variant | 19 | A16,B29,B35,B36,B42,B43,B61,B65,B74,B95,C17,C26,C32,C40,C5,C67,C87,D1,D8 |
Chr5:1530270 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B60 |
Chr5:1530274 |
AC |
A |
1bp_deletion | frameshift_variant | 1 | C26 |
Chr5:1530274 |
AC |
A |
1bp_deletion | CDS_variant | 1 | C26 |
Chr5:1530278 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B123,C83 |
Chr5:1530280 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B123,B63,C14,C83 |
Chr5:1530300 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B122,B13 |
Chr5:1530304 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | B104,B126,B78,C21,D10 |
Chr5:1530328 |
ATT |
A |
2bp_deletion | frameshift_variant | 1 | B48 |
Chr5:1530328 |
ATT |
A |
2bp_deletion | CDS_variant | 1 | B48 |
Chr5:1530355 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | A23 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057812479.1PF00931
NB-ARC 175-325 aa
PF23598
LRR_14 533-818 aa
XP_057812480.1PF00931
NB-ARC 175-325 aa
PF23598
LRR_14 533-818 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057812479.1 |
Pfam | PF00931 |
NB-ARC | Domain | 175 | 325 | 2.8e-25 | 89.6 | NB-ARC domain |
XP_057812479.1 |
Pfam | PF23598 |
LRR_14 | Repeat | 533 | 818 | 1e-16 | 61.4 | Leucine-rich repeat region |
XP_057812480.1 |
Pfam | PF00931 |
NB-ARC | Domain | 175 | 325 | 2.8e-25 | 89.6 | NB-ARC domain |
XP_057812480.1 |
Pfam | PF23598 |
LRR_14 | Repeat | 533 | 818 | 1e-16 | 61.4 | Leucine-rich repeat region |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
2 records
下载 cDNA FASTA2 records
下载 CDS FASTA2 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。