Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr05G000193`

染色体: Chr05 坐标: 1547844-1592809 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr05G000193`
名称	SmilChr05G000193
描述	probable disease resistance RPP8-like protein 4
染色体 / SeqID	Chr05 / NC_080391.1
坐标与链方向	1547844 - 1592809 / `-`

ID 对照

NCBI Gene ID	`LOC131026591`
GeneID	`131026591`
locus_tag	`-`
NCBI Name	`LOC131026591`
原始查询	`SmilChr05G000193`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	probable disease resistance RPP8-like protein 4
产物	probable disease resistance RPP8-like protein 4
Arabidopsis	`AT5G48620` (AT5G48620) Disease resistance protein (CC-NBS-LRR class) family [Source:NCBI gene (formerly Entrezgene);Acc:834919] identity=25.3; qcov=0.984; evalue=1.95e-22; confidence=low
Rice	`Os11g0550100` - identity=33.7; qcov=0.449; evalue=7.44e-26; confidence=low
GO	GO:0043531 (ADP binding); GO:0098542 (defense response to other organism)
KEGG	-
Pfam	PF00931 (NB-ARC); PF23598 (LRR_14)
InterPro	-
eggNOG	-
NR	GeneID:131026591

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cell membrane	细胞膜	0.80000	`XP_057812470.1`
2	Cytosol	细胞质基质	0.20000	`XP_057812470.1`
3	Nucleus	细胞核	0.00000	`XP_057812470.1`
4	Chromosome	染色体	0.00000	`XP_057812470.1`
5	Centromere	着丝粒	0.00000	`XP_057812470.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr5:1589769`	`CAT`	`C`	2bp_deletion	frameshift_variant	84	A10,A13,A14,A24,A25,A4,A8,B10,B101,B106,B109,B112,B114,B120,B123,B125,B133,B135,B138,B14,B17,B18,B19,B23,B25,B27,B30,B32,B36,B38,B4,B41,B42,B44,B50,B53,B54,B55,B58,B66,B69,B75,B76,B79,B8,B80,B82,B83,B87,B9,B97,C11,C18,C19,C23,C24,C26,C29,C3,C30,C31,C36,C37,C40,C41,C43,C44,C48,C55,C56,C60,C63,C67,C69,C7,C77,C80,C82,C83,C86,C87,D11,D3,D4
`Chr5:1589772`	`T`	`TCC`	2bp_insertion	frameshift_variant	82	A10,A13,A14,A24,A25,A4,A8,B10,B101,B106,B109,B112,B114,B120,B123,B125,B133,B135,B138,B14,B17,B18,B19,B23,B25,B27,B30,B32,B36,B38,B4,B41,B44,B50,B53,B54,B55,B58,B66,B69,B75,B76,B79,B8,B80,B82,B83,B9,B97,C11,C18,C19,C23,C24,C26,C29,C3,C30,C31,C36,C37,C40,C41,C43,C44,C48,C55,C56,C60,C63,C67,C69,C7,C77,C80,C82,C83,C86,C87,D11,D3,D4
`Chr5:1589788`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B140,C72,C76,C83
`Chr5:1589805`	`T`	`TTC`	2bp_insertion	frameshift_variant	1	B29
`Chr5:1589805`	`T`	`TTC`	2bp_insertion	CDS_variant	1	B29
`Chr5:1589820`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B13
`Chr5:1589841`	`AAT`	`A`	2bp_deletion	frameshift_variant	1	B120
`Chr5:1589841`	`AAT`	`A`	2bp_deletion	CDS_variant	1	B120
`Chr5:1589845`	`A`	`AAC`	2bp_insertion	frameshift_variant	1	B28
`Chr5:1589845`	`A`	`AAC`	2bp_insertion	CDS_variant	1	B28
`Chr5:1589846`	`A`	`AC`	1bp_insertion	frameshift_variant	2	B2,C79
`Chr5:1589846`	`A`	`AC`	1bp_insertion	CDS_variant	2	B2,C79

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057812470.1

869 aa

434

869

NB-ARC

LRR_14

PF00931 NB-ARC 173-324 aa PF23598 LRR_14 533-819 aa

XP_057812471.1

869 aa

434

869

NB-ARC

LRR_14

PF00931 NB-ARC 173-324 aa PF23598 LRR_14 533-819 aa

XP_057812472.1

869 aa

434

869

NB-ARC

LRR_14

PF00931 NB-ARC 173-324 aa PF23598 LRR_14 533-819 aa

XP_057812473.1

869 aa

434

869

NB-ARC

LRR_14

PF00931 NB-ARC 173-324 aa PF23598 LRR_14 533-819 aa

XP_057812475.1

869 aa

434

869

NB-ARC

LRR_14

PF00931 NB-ARC 173-324 aa PF23598 LRR_14 533-819 aa

XP_057812476.1

869 aa

434

869

NB-ARC

LRR_14

PF00931 NB-ARC 173-324 aa PF23598 LRR_14 533-819 aa

XP_057812477.1

430 aa

215

430

NB-ARC

PF00931 NB-ARC 173-324 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057812470.1`	Pfam	`PF00931`	NB-ARC	Domain	173	324	2.7e-27	96.2	NB-ARC domain
`XP_057812470.1`	Pfam	`PF23598`	LRR_14	Repeat	533	819	5.2e-17	62.4	Leucine-rich repeat region
`XP_057812471.1`	Pfam	`PF00931`	NB-ARC	Domain	173	324	2.7e-27	96.2	NB-ARC domain
`XP_057812471.1`	Pfam	`PF23598`	LRR_14	Repeat	533	819	5.2e-17	62.4	Leucine-rich repeat region
`XP_057812472.1`	Pfam	`PF00931`	NB-ARC	Domain	173	324	2.7e-27	96.2	NB-ARC domain
`XP_057812472.1`	Pfam	`PF23598`	LRR_14	Repeat	533	819	5.2e-17	62.4	Leucine-rich repeat region
`XP_057812473.1`	Pfam	`PF00931`	NB-ARC	Domain	173	324	2.7e-27	96.2	NB-ARC domain
`XP_057812473.1`	Pfam	`PF23598`	LRR_14	Repeat	533	819	5.2e-17	62.4	Leucine-rich repeat region
`XP_057812475.1`	Pfam	`PF00931`	NB-ARC	Domain	173	324	2.7e-27	96.2	NB-ARC domain
`XP_057812475.1`	Pfam	`PF23598`	LRR_14	Repeat	533	819	5.2e-17	62.4	Leucine-rich repeat region
`XP_057812476.1`	Pfam	`PF00931`	NB-ARC	Domain	173	324	2.7e-27	96.2	NB-ARC domain
`XP_057812476.1`	Pfam	`PF23598`	LRR_14	Repeat	533	819	5.2e-17	62.4	Leucine-rich repeat region
`XP_057812477.1`	Pfam	`PF00931`	NB-ARC	Domain	173	324	7.3e-28	98.0	NB-ARC domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

7 records

下载 cDNA FASTA

XM_057956493.1
AACATTAATGCAAGGTTGATTTTGAAGCAGCTCTCATAATTTTCAACAGCTTGATTGCTCAATCTTCATAATTTCTTGCTACTATTCTTCCACACAATTGCCTTCAAAATCATCAATAGATCGATATTTTAGCATTACATTATACACATCTTTTCAAATCATTTACTAAAGTTCTTGAATGTGGAATTGAAAGTTTCTGAAATTGTATCAAATCCAGCTGCCGCCGCCGTCGAGAGTTTAGTTTAAGCTTCATTTTGGAG...

XM_057956492.1
AACATTAATGCAAGGTTGATTTTGAAGCAGCTCTCATAATTTTCAACAGCTTGATTGCTCAATCTTCATAATTTCTTGCTACTATTCTTCCACACAATTGCCTTCAAAATCATCAATAGATCGATATTTTAGCATTACATTATACACATCTTTTCAAATCATTTACTAAAGTTCTTGAATGTGGAATTGAAAGTTTCTGAAATTGTATCAAATCCAGCTGCCGCCGCCGTCGAGAGTTTAGTTTAAGCTTCATTTTGGAG...

CDS

7 records

下载 CDS FASTA

LOC131026591
ATGGCGGCTTTTGGTGCGGCGGCTTCTCTCAAGAATACGATTCTGCGTATTCTACAATCGTCTCGCATTTCTCTCGTTTCCCACTCTCCACAAATCTTACAGCCTGCCTCCGACGGGATGGATCGATTGCAGAAAGTTCTGCGAAAATTGGACGAGACCAGCTGCAGCAAGATCAGGACGGAGGTGAATGCTTTGGATGAACTCATCAAAGAGGCAGTTTGGGAATTCGAAGATTTACTCGAATCCCATGTCTTACCTGA...

Protein

7 records

下载 Protein FASTA

XP_057812470.1
MAAFGAAASLKNTILRILQSSRISLVSHSPQILQPASDGMDRLQKVLRKLDETSCSKIRTEVNALDELIKEAVWEFEDLLESHVLPEILPQLQSERSNLSFSVDLQSLQHHVDCFVEMVKMMEEEYIIEMENMAEEEGEPISSRIDFGGIKSNMVGRSYAFQDARDNLLEDKHYSIIGMAGVGKTTLAKHIFEDPSIRSHFEFRAWVKVGRKCEPNELLRCVLAQVDPNAYRMLAQGDDDDEEVVELLKEKLQDKKCLIV...

XP_057812471.1
MAAFGAAASLKNTILRILQSSRISLVSHSPQILQPASDGMDRLQKVLRKLDETSCSKIRTEVNALDELIKEAVWEFEDLLESHVLPEILPQLQSERSNLSFSVDLQSLQHHVDCFVEMVKMMEEEYIIEMENMAEEEGEPISSRIDFGGIKSNMVGRSYAFQDARDNLLEDKHYSIIGMAGVGKTTLAKHIFEDPSIRSHFEFRAWVKVGRKCEPNELLRCVLAQVDPNAYRMLAQGDDDDEEVVELLKEKLQDKKCLIV...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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