当前解析结果
SmilChr05G000205| 统一新 Gene ID | SmilChr05G000205 |
|---|---|
| 名称 | SmilChr05G000205 |
| 描述 | uncharacterized SmilChr05G000205 |
| 染色体 / SeqID | Chr05 / NC_080391.1 |
| 坐标与链方向 | 1625450 - 1629938 / - |
| NCBI Gene ID | LOC131026622 |
|---|---|
| GeneID | 131026622 |
| locus_tag | - |
| NCBI Name | LOC131026622 |
| 原始查询 | SmilChr05G000205 |
| 来源 | GFF basic annotation; Arabidopsis/Rice homolog |
|---|---|
| 描述 | hit=Os11g0129800; species=rice; confidence=weak |
| 产物 | hit=Os11g0129800; species=rice; confidence=weak |
| Arabidopsis | AT5G50350 (AT5G50350)uncharacterized protein [Source:NCBI gene (formerly Entrezgene);Acc:835102] identity=37.9; qcov=0.18; evalue=1.83e-07; confidence=weak |
| Rice | Os11g0129800- identity=53.1; qcov=0.214; evalue=8.04e-26; confidence=weak |
| GO | - |
| KEGG | - |
| Pfam | - |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131026622 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cytoskeleton | 细胞骨架 | 1.00000 | XP_057812519.1 |
| 2 | Nucleus | 细胞核 | 0.80000 | XP_057812519.1 |
| 3 | Cell membrane | 细胞膜 | 0.60000 | XP_057812519.1 |
| 4 | Nucleus membrane | 核膜 | 0.20000 | XP_057812519.1 |
| 5 | Chromosome | 染色体 | 0.00000 | XP_057812519.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr5:1625897 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C83 |
Chr5:1625908 |
AAT |
A |
2bp_deletion | frameshift_variant | 47 | A10,A2,A20,A21,A4,B102,B109,B110,B124,B137,B17,B27,B28,B29,B35,B36,B4,B40,B44,B45,B47,B56,B60,B73,B81,B85,B86,B96,B97,C19,C23,C29,C3,C31,C4,C41,C43,C44,C47,C48,C50,C56,C65,C72,C74,D5,D6 |
Chr5:1625916 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B68,C16,C48,C86 |
Chr5:1626097 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | A19,B99,C52,C87 |
Chr5:1626101 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | D11 |
Chr5:1626871 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | A19,B99,C52,C87 |
Chr5:1626889 |
A |
AG |
1bp_insertion | frameshift_variant | 1 | D11 |
Chr5:1626889 |
A |
AG |
1bp_insertion | CDS_variant | 1 | D11 |
Chr5:1626992 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B109,B66 |
Chr5:1627078 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B64 |
Chr5:1627726 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B13,B140 |
Chr5:1627753 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | D11 |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
2 records
下载 cDNA FASTA2 records
下载 CDS FASTA2 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。