Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID,以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因,再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。
示例

当前解析结果

SmilChr05G000205

染色体: Chr05 坐标: 1625450-1629938 链方向: - 类型: protein_coding

基本信息

统一新 Gene IDSmilChr05G000205
名称SmilChr05G000205
描述uncharacterized SmilChr05G000205
染色体 / SeqIDChr05 / NC_080391.1
坐标与链方向1625450 - 1629938 / -

ID 对照

NCBI Gene IDLOC131026622
GeneID131026622
locus_tag-
NCBI NameLOC131026622
原始查询SmilChr05G000205

查看完整 ID 对照表

功能注释

来源GFF basic annotation; Arabidopsis/Rice homolog
描述hit=Os11g0129800; species=rice; confidence=weak
产物hit=Os11g0129800; species=rice; confidence=weak
ArabidopsisAT5G50350 (AT5G50350)
uncharacterized protein [Source:NCBI gene (formerly Entrezgene);Acc:835102]
identity=37.9; qcov=0.18; evalue=1.83e-07; confidence=weak
RiceOs11g0129800
-
identity=53.1; qcov=0.214; evalue=8.04e-26; confidence=weak
GO-
KEGG-
Pfam-
InterPro-
eggNOG-
NRGeneID:131026622

打开注释模块

亚细胞定位 Top 5

Rank定位位置中文ScoreProtein ID
1 Cytoskeleton 细胞骨架 1.00000 XP_057812519.1
2 Nucleus 细胞核 0.80000 XP_057812519.1
3 Cell membrane 细胞膜 0.60000 XP_057812519.1
4 Nucleus membrane 核膜 0.20000 XP_057812519.1
5 Chromosome 染色体 0.00000 XP_057812519.1

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。

位置 REF ALT 类型 影响 携带材料数 材料
Chr5:1625897 C T EMS_canonical_SNV CDS_variant 1 C83
Chr5:1625908 AAT A 2bp_deletion frameshift_variant 47 A10,A2,A20,A21,A4,B102,B109,B110,B124,B137,B17,B27,B28,B29,B35,B36,B4,B40,B44,B45,B47,B56,B60,B73,B81,B85,B86,B96,B97,C19,C23,C29,C3,C31,C4,C41,C43,C44,C47,C48,C50,C56,C65,C72,C74,D5,D6
Chr5:1625916 C T EMS_canonical_SNV CDS_variant 4 B68,C16,C48,C86
Chr5:1626097 G A EMS_canonical_SNV CDS_variant 4 A19,B99,C52,C87
Chr5:1626101 C T EMS_canonical_SNV CDS_variant 1 D11
Chr5:1626871 C T EMS_canonical_SNV CDS_variant 4 A19,B99,C52,C87
Chr5:1626889 A AG 1bp_insertion frameshift_variant 1 D11
Chr5:1626889 A AG 1bp_insertion CDS_variant 1 D11
Chr5:1626992 C T EMS_canonical_SNV CDS_variant 2 B109,B66
Chr5:1627078 G A EMS_canonical_SNV CDS_variant 1 B64
Chr5:1627726 C T EMS_canonical_SNV CDS_variant 2 B13,B140
Chr5:1627753 C T EMS_canonical_SNV CDS_variant 1 D11

进入 EMS 突变库

预测功能结构域

当前发布数据中,此基因没有可展示的 Pfam 结构域命中。

进入结构域查询

cDNA / CDS / Protein 序列

下载基因组 DNA(仅基因区域)

每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA
XM_057956536.1
TCTCAAAAAAGACATAAATAGTTTTTTTTTTTTTTTGATAAATCCAAGACATAAATATTCATCACAACAATATGACATTATTATTCAAATAAATAATGTCACATACGACAAAAAAACTGATGAACTCAACACCAGAAAGATTCATTTCTTCATTTGTATATTTTCCACAGATTTAATCCGAAGAAATAATTCCCATAAAAATGGCCACCGCCTCCTTCAAATCCACTTCCAGAAGAGGCGCAGCTACAGAACCCAAAGCC...
XM_057956537.1
ATTATTCAAATAAATAATGTCACATACGACAAAAAAACTGATGAACTCAACACCAGAAAGATTCATTTCTTCATTTGTATATTTTCCACAGATTTAATCCGAAGAAATAATTCCCATAAAAATGGCCACCGCCTCCTTCAAATCCACTTCCAGAAGAGGCGCAGCTACAGAACCCAAAGCCCCGCCGCCCGCCGCCGCTTCACGGCGGCGTTCCCACAGCGTCAGCGCTGTTTCCCGGAAGACCCACGTCCCCTTCGACG...

CDS

2 records

下载 CDS FASTA
LOC131026622
ATGGCCACCGCCTCCTTCAAATCCACTTCCAGAAGAGGCGCAGCTACAGAACCCAAAGCCCCGCCGCCCGCCGCCGCTTCACGGCGGCGTTCCCACAGCGTCAGCGCTGTTTCCCGGAAGACCCACGTCCCCTTCGACGACAATACTCCGATTTCCTCCGAATTCTCCAATAGCAGAGATAACCCTCTTTTCTGGAGCAGATCTTCTTCACCTCGAGATAAAGAAGAAAGCGGAAGGATCGGTGAGATAGCTACCAGTAG...
LOC131026622
ATGGCCACCGCCTCCTTCAAATCCACTTCCAGAAGAGGCGCAGCTACAGAACCCAAAGCCCCGCCGCCCGCCGCCGCTTCACGGCGGCGTTCCCACAGCGTCAGCGCTGTTTCCCGGAAGACCCACGTCCCCTTCGACGACAATACTCCGATTTCCTCCGAATTCTCCAATAGCAGAGATAACCCTCTTTTCTGGAGCAGATCTTCTTCACCTCGAGATAAAGAAGAAAGCGGAAGGATCGGTGAGATAGCTACCAGTAG...

Protein

2 records

下载 Protein FASTA
XP_057812519.1
MATASFKSTSRRGAATEPKAPPPAAASRRRSHSVSAVSRKTHVPFDDNTPISSEFSNSRDNPLFWSRSSSPRDKEESGRIGEIATSSNKSSSKLNAKSAVNGNGNVGGNSSGEQRGRSVTRSLSHSNGIGRSLSRVRGRSVSTASRSGAYENEKEQGCLTTPIAQSRHEVKRTSNSISRTNSVRNRVSNPGEAKYAGVRTARNQAKEWSEDDSACSLQISNLEDGISVGSLSEAEEKTIRNAFEELNFFRRNNANQAAPA...
XP_057812520.1
MATASFKSTSRRGAATEPKAPPPAAASRRRSHSVSAVSRKTHVPFDDNTPISSEFSNSRDNPLFWSRSSSPRDKEESGRIGEIATSSNKSSSKLNAKSAVNGNGNVGGNSSGEQRGRSVTRSLSHSNGIGRSLSRVRGRSVSTASRSGAYENEKEQGCLTTPIAQSRHEVKRTSNSISRTNSVRNRVSNPGEAKYAGVRTARNQAKEWSEDDSACSLQISNLEDGISVGSLSEAEEKTIRNAFEELNFFRRNNANQAAPA...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

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