Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr05G000206`

染色体: Chr05 坐标: 1633195-1645182 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr05G000206`
名称	SmilChr05G000206
描述	DNA gyrase subunit A, chloroplastic/mitochondrial
染色体 / SeqID	Chr05 / NC_080391.1
坐标与链方向	1633195 - 1645182 / `+`

ID 对照

NCBI Gene ID	`LOC131026582`
GeneID	`131026582`
locus_tag	`-`
NCBI Name	`LOC131026582`
原始查询	`SmilChr05G000206`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	DNA gyrase subunit A, chloroplastic/mitochondrial
产物	DNA gyrase subunit A%2C chloroplastic/mitochondrial
Arabidopsis	`AT3G10690` (GYRA) DNA GYRASE A [Source:NCBI gene (formerly Entrezgene);Acc:820238] identity=74.3; qcov=0.945; evalue=0; confidence=high
Rice	`Os03g0812000` - identity=69.9; qcov=0.437; evalue=0; confidence=low
GO	GO:0003677 (DNA binding); GO:0003918 (DNA topoisomerase type II (double strand cut, ATP-hydrolyzing) activity); GO:0005524 (ATP binding); GO:0005694 (chromosome); GO:0005737 (cytoplasm); GO:0006265 (DNA topological change); GO:0009330 (DNA topoisomerase type II (double strand cut, ATP-hydrolyzing) complex)
KEGG	-
Pfam	PF00521 (DNA_topoisoIV); PF03989 (DNA_gyraseA_C)
InterPro	-
eggNOG	-
NR	GeneID:131026582

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Chloroplast	叶绿体	1.00000	`XP_057812458.1`
2	Mitochondrion	线粒体	0.60000	`XP_057812458.1`
3	Chloroplast stroma	叶绿体基质	0.20000	`XP_057812458.1`
4	Nucleus	细胞核	0.00000	`XP_057812458.1`
5	Chromosome	染色体	0.00000	`XP_057812458.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr5:1633375`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B20,B24,B78
`Chr5:1633394`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B59,D8
`Chr5:1633455`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B66,C33
`Chr5:1633470`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B101,B55,D4
`Chr5:1633563`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	D11
`Chr5:1633584`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B105,C75
`Chr5:1633647`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	A19,B99,C52,C87,D10
`Chr5:1633668`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B128
`Chr5:1633680`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B140,B24,B64,B7
`Chr5:1633698`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	A18,B66,C2,C33
`Chr5:1633716`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	A4,B35,C44
`Chr5:1634500`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B124

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057812458.1

942 aa

471

942

DNA_topoisoIV

DNA_gyraseA_C

PF00521 DNA_topoisoIV 122-563 aa PF03989 DNA_gyraseA_C 598-643 aa PF03989 DNA_gyraseA_C 647-697 aa PF03989 DNA_gyraseA_C 703-748 aa PF03989 DNA_gyraseA_C 751-797 aa PF03989 DNA_gyraseA_C 823-868 aa PF03989 DNA_gyraseA_C 881-920 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057812458.1`	Pfam	`PF00521`	DNA_topoisoIV	Domain	122	563	1.5e-161	538.8	DNA gyrase/topoisomerase IV, subunit A
`XP_057812458.1`	Pfam	`PF03989`	DNA_gyraseA_C	Repeat	598	643	5.5e-54	180.1	DNA gyrase C-terminal domain, beta-propeller
`XP_057812458.1`	Pfam	`PF03989`	DNA_gyraseA_C	Repeat	647	697	5.5e-54	180.1	DNA gyrase C-terminal domain, beta-propeller
`XP_057812458.1`	Pfam	`PF03989`	DNA_gyraseA_C	Repeat	703	748	5.5e-54	180.1	DNA gyrase C-terminal domain, beta-propeller
`XP_057812458.1`	Pfam	`PF03989`	DNA_gyraseA_C	Repeat	751	797	5.5e-54	180.1	DNA gyrase C-terminal domain, beta-propeller
`XP_057812458.1`	Pfam	`PF03989`	DNA_gyraseA_C	Repeat	823	868	5.5e-54	180.1	DNA gyrase C-terminal domain, beta-propeller
`XP_057812458.1`	Pfam	`PF03989`	DNA_gyraseA_C	Repeat	881	920	5.5e-54	180.1	DNA gyrase C-terminal domain, beta-propeller

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA

XM_057956475.1
TTGGCGCGCAAGACCTCGAAACAATAAACCCTAAAAAAACAAATTTAGGGTTTTACAAATTCGAAGGTAATTTCATTTCATTTCACTCAAACTGAAGCTCCATTTCCGGCGAAGCCATATATCAATGGAATGAGCTCGCATTGCATCCGACCTGCAGCAGCCCATTTCGCACTCCCCAAGGAACGCATGGCTTTCGCCGCCGGGCTCCGTTTGCTCCGCTCTCACCCACTCTCATTCTCTTCCGCCGCGCCGCCGCGCCT...

CDS

1 records

下载 CDS FASTA

LOC131026582
ATGAGCTCGCATTGCATCCGACCTGCAGCAGCCCATTTCGCACTCCCCAAGGAACGCATGGCTTTCGCCGCCGGGCTCCGTTTGCTCCGCTCTCACCCACTCTCATTCTCTTCCGCCGCGCCGCCGCGCCTGCTACTAGCTCGACGCGCCTCCGACCACCGCTTTCTCTCCGCCGTGAACCCCCACCAGCGCCGGAGGTTGTTCGCCGCCAAGGCTTCCTCGAAGGATGTGGAGGAGAACGGGAGTGTGGTTGCCTTGAA...

Protein

1 records

下载 Protein FASTA

XP_057812458.1
MSSHCIRPAAAHFALPKERMAFAAGLRLLRSHPLSFSSAAPPRLLLARRASDHRFLSAVNPHQRRRLFAAKASSKDVEENGSVVALKDGGGEGGDGRVVVTELHKEATEAYLSYAMSVLLGRALPDVRDGLKPVHRRILYAMHELGLASKKPHKKCARVVGEVLGKFHPHGDTAVYDSLVRMAQDFSLRSPLIRGHGNFGSIDADPAAAMRYTECRLEALTEAMLLADLEQDTVDFVPNFDNSQKEPSLLPARIPNLLLN...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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JBrowse

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