Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr05G000214`

染色体: Chr05 坐标: 1683802-1686882 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr05G000214`
名称	SmilChr05G000214
描述	putative late blight resistance protein homolog R1B-16
染色体 / SeqID	Chr05 / NC_080391.1
坐标与链方向	1683802 - 1686882 / `-`

ID 对照

NCBI Gene ID	`LOC131026608`
GeneID	`131026608`
locus_tag	`-`
NCBI Name	`LOC131026608`
原始查询	`SmilChr05G000214`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	putative late blight resistance protein homolog R1B-16
产物	putative late blight resistance protein homolog R1B-16
Arabidopsis	`AT5G35450` (AT5G35450) Disease resistance protein (CC-NBS-LRR class) family [Source:NCBI gene (formerly Entrezgene);Acc:833508] identity=27.1; qcov=1.03; evalue=5.98e-70; confidence=low
Rice	`Os11g0633500` - identity=31.1; qcov=0.625; evalue=2.51e-66; confidence=low
GO	GO:0043531 (ADP binding); GO:0098542 (defense response to other organism)
KEGG	-
Pfam	PF00931 (NB-ARC); PF13401 (AAA_22); PF23559 (WHD_DRP)
InterPro	-
eggNOG	-
NR	GeneID:131026608

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cell membrane	细胞膜	0.60000	`XP_057812502.1`
2	Cytosol	细胞质基质	0.40000	`XP_057812502.1`
3	Cytoplasm	细胞质	0.20000	`XP_057812502.1`
4	Nucleus	细胞核	0.00000	`XP_057812502.1`
5	Chromosome	染色体	0.00000	`XP_057812502.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr5:1684350`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B85
`Chr5:1684365`	`T`	`TTG`	2bp_insertion	frameshift_variant	1	B44
`Chr5:1684365`	`T`	`TTG`	2bp_insertion	CDS_variant	1	B44
`Chr5:1684389`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B73,C60,D2
`Chr5:1684411`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	D10
`Chr5:1684424`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B73,C11,C34,C64
`Chr5:1684432`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B121
`Chr5:1684434`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B15,C21,C84
`Chr5:1684471`	`ACC`	`A`	2bp_deletion	frameshift_variant	2	A15,B96
`Chr5:1684471`	`ACC`	`A`	2bp_deletion	CDS_variant	2	A15,B96
`Chr5:1684473`	`C`	`T`	EMS_canonical_SNV	stop_gained	64	A1,A20,A22,B10,B101,B102,B118,B122,B123,B129,B136,B15,B21,B22,B26,B3,B30,B31,B42,B47,B53,B56,B59,B60,B61,B63,B66,B67,B68,B73,B8,B85,B88,B89,B95,C1,C10,C11,C14,C15,C17,C26,C27,C29,C32,C33,C35,C36,C42,C45,C48,C54,C60,C64,C68,C71,C73,C76,C77,C79,C85,D3,D5,D7
`Chr5:1684510`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B15,C21,C84

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057812502.1

834 aa

417

834

NB-ARC

AAA_22

WHD_DRP

PF00931 NB-ARC 152-319 aa PF13401 AAA_22 169-256 aa PF23559 WHD_DRP 403-472 aa

XP_057812503.1

834 aa

417

834

NB-ARC

AAA_22

WHD_DRP

PF00931 NB-ARC 152-319 aa PF13401 AAA_22 169-256 aa PF23559 WHD_DRP 403-472 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057812502.1`	Pfam	`PF00931`	NB-ARC	Domain	152	319	1.7e-43	148.9	NB-ARC domain
`XP_057812502.1`	Pfam	`PF13401`	AAA_22	Domain	169	256	2.6e-08	34.9	AAA domain
`XP_057812502.1`	Pfam	`PF23559`	WHD_DRP	Domain	403	472	2.8e-17	63.2	Disease resistance protein Winged helix domain
`XP_057812503.1`	Pfam	`PF00931`	NB-ARC	Domain	152	319	1.7e-43	148.9	NB-ARC domain
`XP_057812503.1`	Pfam	`PF13401`	AAA_22	Domain	169	256	2.6e-08	34.9	AAA domain
`XP_057812503.1`	Pfam	`PF23559`	WHD_DRP	Domain	403	472	2.8e-17	63.2	Disease resistance protein Winged helix domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057956520.1
TCTTATCTTCATTCACACTCGTCTCATCTCATATTCTCTCTGCAACTCCCAAAACAACCATGGCAGCAGCTTATGCAACTCTACTTTCTGCTATGAATATCATAAACAACCTTCACCATCATCCCCGCCCTCCTATTTCTCTCAACATTAAACAAGTTGAGTCTCTCACTGAAAAAATCAGTTTCCTGCTCGAATTTCTCGAGGGCTATAACCCCCATCGTGACTACTCCAAAGAAGCGGATCCATTGGAGTGTCGCATT...

XM_057956519.1
TCTTATCTTCATTCACACTCGTCTCATCTCATATTCTCTCTGCAACTCCCAAAACAACCATGGCAGCAGCTTATGCAACTCTACTTTCTGCTATGAATATCATAAACAACCTTCACCATCATCCCCGCCCTCCTATTTCTCTCAACATTAAACAAGTTGAGTCTCTCACTGAAAAAATCAGTTTCCTGCTCGAATTTCTCGAGGGCTATAACCCCCATCGTGACTACTCCAAAGAAGCGGATCCATTGGAGTGTCGCATT...

CDS

2 records

下载 CDS FASTA

LOC131026608
ATGGCAGCAGCTTATGCAACTCTACTTTCTGCTATGAATATCATAAACAACCTTCACCATCATCCCCGCCCTCCTATTTCTCTCAACATTAAACAAGTTGAGTCTCTCACTGAAAAAATCAGTTTCCTGCTCGAATTTCTCGAGGGCTATAACCCCCATCGTGACTACTCCAAAGAAGCGGATCCATTGGAGTGTCGCATTGCAGATGCAGCTTATGCGGCCGAACACGCCATTGAATCTCATATTTTCGATCAGCACAC...

Protein

2 records

下载 Protein FASTA

XP_057812502.1
MAAAYATLLSAMNIINNLHHHPRPPISLNIKQVESLTEKISFLLEFLEGYNPHRDYSKEADPLECRIADAAYAAEHAIESHIFDQHTNNGENMSSCGLYEALEKVIQDMASIEEEAKQIQGRVGLQHQHQLPPDSSRSSSIPQQSSMVGADDLKRQMMDKLTSHCRDLQIIPIVGMGGSGKTTLARNIYEERLIKKHFHICAWVTISQEYTIREIFEAVLRQSNIKVDDNLSEHELRYKLHQHLYHRRYLIIMDDMWSID...

XP_057812503.1
MAAAYATLLSAMNIINNLHHHPRPPISLNIKQVESLTEKISFLLEFLEGYNPHRDYSKEADPLECRIADAAYAAEHAIESHIFDQHTNNGENMSSCGLYEALEKVIQDMASIEEEAKQIQGRVGLQHQHQLPPDSSRSSSIPQQSSMVGADDLKRQMMDKLTSHCRDLQIIPIVGMGGSGKTTLARNIYEERLIKKHFHICAWVTISQEYTIREIFEAVLRQSNIKVDDNLSEHELRYKLHQHLYHRRYLIIMDDMWSID...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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