Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr05G000233`

染色体: Chr05 坐标: 1807526-1813292 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr05G000233`
名称	SmilChr05G000233
描述	uncharacterized SmilChr05G000233
染色体 / SeqID	Chr05 / NC_080391.1
坐标与链方向	1807526 - 1813292 / `+`

ID 对照

NCBI Gene ID	`LOC130984959`
GeneID	`130984959`
locus_tag	`-`
NCBI Name	`LOC130984959`
原始查询	`SmilChr05G000233`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	ankyrin repeat family protein [Source:NCBI gene (formerly Entrezgene);Acc:819629]; symbol=TPR10; hit=AT3G04710; species=arabidopsis; confidence=low
产物	ankyrin repeat family protein [Source:NCBI gene (formerly Entrezgene);Acc:819629]; symbol=TPR10; hit=AT3G04710; species=arabidopsis; confidence=low
Arabidopsis	`AT3G04710` (TPR10) ankyrin repeat family protein [Source:NCBI gene (formerly Entrezgene);Acc:819629] identity=66.9; qcov=0.378; evalue=4.27e-49; confidence=low
Rice	`Os05g0103600` - identity=56.6; qcov=0.381; evalue=7.75e-37; confidence=low
GO	GO:0005515 (protein binding)
KEGG	-
Pfam	PF00023 (Ank); PF12796 (Ank_2); PF13606 (Ank_3); PF13637 (Ank_4); PF13857 (Ank_5)
InterPro	-
eggNOG	-
NR	GeneID:130984959

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	1.00000	`XP_057763643.1`
2	Cytoplasm	细胞质	0.80000	`XP_057763643.1`
3	Cytosol	细胞质基质	0.40000	`XP_057763643.1`
4	Chromosome	染色体	0.00000	`XP_057763643.1`
5	Centromere	着丝粒	0.00000	`XP_057763643.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr5:1807617`	`T`	`TCA`	2bp_insertion	frameshift_variant	2	B9,C3
`Chr5:1807617`	`T`	`TCA`	2bp_insertion	CDS_variant	2	B9,C3
`Chr5:1810870`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B104,D9
`Chr5:1810872`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B91,C42
`Chr5:1810873`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B46,B87,C38,C67
`Chr5:1810913`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	D11,D8
`Chr5:1810962`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B33,C8
`Chr5:1810977`	`A`	`AGG`	2bp_insertion	frameshift_variant	2	B56,B96
`Chr5:1810977`	`A`	`AGG`	2bp_insertion	CDS_variant	2	B56,B96
`Chr5:1811030`	`GA`	`G`	1bp_deletion	frameshift_variant	1	B66
`Chr5:1811030`	`GA`	`G`	1bp_deletion	CDS_variant	1	B66
`Chr5:1811151`	`G`	`GT`	1bp_insertion	frameshift_variant	2	C20,C61

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057763643.1

323 aa

162

323

Ank_2

Ank_4

Ank_5

Ank_3

Ank

Ank_4

Ank_3

Ank

Ank_4

PF12796 Ank_2 9-105 aa PF13637 Ank_4 10-64 aa PF13857 Ank_5 41-85 aa PF13606 Ank_3 45-72 aa PF00023 Ank 47-75 aa PF13637 Ank_4 48-98 aa PF13606 Ank_3 77-105 aa PF00023 Ank 77-106 aa PF13637 Ank_4 84-125 aa

XP_057763644.1

320 aa

160

320

Ank_2

Ank_4

Ank_5

Ank_3

Ank

Ank_4

Ank_3

Ank

Ank_4

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057763643.1`	Pfam	`PF12796`	Ank_2	Repeat	9	105	9.2e-18	65.3	Ankyrin repeats (3 copies)
`XP_057763643.1`	Pfam	`PF13637`	Ank_4	Repeat	10	64	4e-24	84.9	Ankyrin repeats (many copies)
`XP_057763643.1`	Pfam	`PF13857`	Ank_5	Repeat	41	85	5.1e-10	40.2	Ankyrin repeats (many copies)
`XP_057763643.1`	Pfam	`PF13606`	Ank_3	Repeat	45	72	2.4e-12	46.4	Ankyrin repeat
`XP_057763643.1`	Pfam	`PF00023`	Ank	Repeat	47	75	1.1e-14	54.5	Ankyrin repeat
`XP_057763643.1`	Pfam	`PF13637`	Ank_4	Repeat	48	98	4e-24	84.9	Ankyrin repeats (many copies)
`XP_057763643.1`	Pfam	`PF13606`	Ank_3	Repeat	77	105	2.4e-12	46.4	Ankyrin repeat
`XP_057763643.1`	Pfam	`PF00023`	Ank	Repeat	77	106	1.1e-14	54.5	Ankyrin repeat
`XP_057763643.1`	Pfam	`PF13637`	Ank_4	Repeat	84	125	4e-24	84.9	Ankyrin repeats (many copies)
`XP_057763644.1`	Pfam	`PF12796`	Ank_2	Repeat	9	105	7.9e-18	65.5	Ankyrin repeats (3 copies)
`XP_057763644.1`	Pfam	`PF13637`	Ank_4	Repeat	10	64	3.7e-24	84.9	Ankyrin repeats (many copies)
`XP_057763644.1`	Pfam	`PF13857`	Ank_5	Repeat	41	85	4.9e-10	40.3	Ankyrin repeats (many copies)
`XP_057763644.1`	Pfam	`PF13606`	Ank_3	Repeat	45	72	2.3e-12	46.5	Ankyrin repeat
`XP_057763644.1`	Pfam	`PF00023`	Ank	Repeat	47	75	1e-14	54.5	Ankyrin repeat
`XP_057763644.1`	Pfam	`PF13637`	Ank_4	Repeat	48	98	3.7e-24	84.9	Ankyrin repeats (many copies)
`XP_057763644.1`	Pfam	`PF13606`	Ank_3	Repeat	77	105	2.3e-12	46.5	Ankyrin repeat
`XP_057763644.1`	Pfam	`PF00023`	Ank	Repeat	77	106	1e-14	54.5	Ankyrin repeat
`XP_057763644.1`	Pfam	`PF13637`	Ank_4	Repeat	84	125	3.7e-24	84.9	Ankyrin repeats (many copies)

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057907660.1
CTTTTGTAACTATCCAATTCTCCGCCCTTGTTCAAAATCTTCTGATTCGTGCTTTTTTTGGTTGCAGAGATGGAAAAATTTCAACAATTCTTGAATGCCGCACAGACTGGAAATTTAGACCTCCTCAAAAAATTGGCGAAGCAGCTCGATAGTGGAATGGGGCTAGCTCAAACGGTAGTAGATGTGAAGGATGCCAACCAGAGAGGGGCTCTGCATTTTGCTGCCAGGGAAGGTCAAACTGAGGTTTGCAAGTATTTGCT...

XM_057907661.1
CTTTTGTAACTATCCAATTCTCCGCCCTTGTTCAAAATCTTCTGATTCGTGCTTTTTTTGGTTGCAGAGATGGAAAAATTTCAACAATTCTTGAATGCCGCACAGACTGGAAATTTAGACCTCCTCAAAAAATTGGCGAAGCAGCTCGATAGTGGAATGGGGCTAGCTCAAACGGTAGTAGATGTGAAGGATGCCAACCAGAGAGGGGCTCTGCATTTTGCTGCCAGGGAAGGTCAAACTGAGGTTTGCAAGTATTTGCT...

CDS

2 records

下载 CDS FASTA

LOC130984959
ATGGAAAAATTTCAACAATTCTTGAATGCCGCACAGACTGGAAATTTAGACCTCCTCAAAAAATTGGCGAAGCAGCTCGATAGTGGAATGGGGCTAGCTCAAACGGTAGTAGATGTGAAGGATGCCAACCAGAGAGGGGCTCTGCATTTTGCTGCCAGGGAAGGTCAAACTGAGGTTTGCAAGTATTTGCTGGAGGAGTTGAAGATGGACATTAATACAAAGGATGAGGATGGAGATACTCCTCTAACGCATGCTGCTCG...

Protein

2 records

下载 Protein FASTA

XP_057763643.1
MEKFQQFLNAAQTGNLDLLKKLAKQLDSGMGLAQTVVDVKDANQRGALHFAAREGQTEVCKYLLEELKMDINTKDEDGDTPLTHAARQGHTALTKYLVDHAADPSIPSGLGTTALHHSAGRGNKRRRIKEKEESVERGRTKFREEEICYQPLTMDMGERTCWTDNDKSVFNSLLRDFRMGELDAEFPNGTFADDGTVNYSKEEFWRALCRLYNNRAAAANASQREPYEMILQGELLRGEIFPPCAACQRIPVFPTSLLKK...

XP_057763644.1
MEKFQQFLNAAQTGNLDLLKKLAKQLDSGMGLAQTVVDVKDANQRGALHFAAREGQTEVCKYLLEELKMDINTKDEDGDTPLTHAARQGHTALTKYLVDHAADPSIPSGLGTTALHHSAGRGNKRRRIKEKEESVERGRTKFREEEIPLTMDMGERTCWTDNDKSVFNSLLRDFRMGELDAEFPNGTFADDGTVNYSKEEFWRALCRLYNNRAAAANASQREPYEMILQGELLRGEIFPPCAACQRIPVFPTSLLKKLAY...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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