Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr05G000235`

染色体: Chr05 坐标: 1815707-1818476 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr05G000235`
名称	SmilChr05G000235
描述	uncharacterized SmilChr05G000235
染色体 / SeqID	Chr05 / NC_080391.1
坐标与链方向	1815707 - 1818476 / `+`

ID 对照

NCBI Gene ID	`LOC130984960`
GeneID	`130984960`
locus_tag	`-`
NCBI Name	`LOC130984960`
原始查询	`SmilChr05G000235`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	ankyrin repeat family protein [Source:NCBI gene (formerly Entrezgene);Acc:819629]; symbol=TPR10; hit=AT3G04710; species=arabidopsis; confidence=medium
产物	ankyrin repeat family protein [Source:NCBI gene (formerly Entrezgene);Acc:819629]; symbol=TPR10; hit=AT3G04710; species=arabidopsis; confidence=medium
Arabidopsis	`AT3G04710` (TPR10) ankyrin repeat family protein [Source:NCBI gene (formerly Entrezgene);Acc:819629] identity=62.4; qcov=0.587; evalue=2.25e-57; confidence=medium
Rice	`Os05g0103600` - identity=56.1; qcov=0.478; evalue=2.99e-40; confidence=medium
GO	GO:0005515 (protein binding)
KEGG	-
Pfam	PF00023 (Ank); PF12796 (Ank_2); PF13606 (Ank_3); PF13637 (Ank_4); PF13857 (Ank_5)
InterPro	-
eggNOG	-
NR	GeneID:130984960

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	1.00000	`XP_057763645.1`
2	Cytosol	细胞质基质	1.00000	`XP_057763645.1`
3	Cytoplasm	细胞质	0.80000	`XP_057763645.1`
4	Nucleoplasm	核质	0.40000	`XP_057763645.1`
5	Chromosome	染色体	0.00000	`XP_057763645.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr5:1815953`	`G`	`GA`	1bp_insertion	frameshift_variant	1	B39
`Chr5:1815953`	`G`	`GA`	1bp_insertion	CDS_variant	1	B39
`Chr5:1816215`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	D10
`Chr5:1816219`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B127,B133,D8
`Chr5:1816268`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	A11,C8
`Chr5:1816274`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B138
`Chr5:1816451`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B49,C31,D7
`Chr5:1816472`	`C`	`CT`	1bp_insertion	frameshift_variant	3	B100,B49,D7
`Chr5:1816472`	`C`	`CT`	1bp_insertion	CDS_variant	3	B100,B49,D7
`Chr5:1816485`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	A16,B92,C40,C74,D11
`Chr5:1816488`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B114,B97
`Chr5:1816507`	`C`	`CAA`	2bp_insertion	frameshift_variant	3	B15,C69,C72

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057763645.1

276 aa

138

276

Ank_2

Ank_4

Ank_5

Ank_3

Ank

Ank_4

Ank_2

Ank_3

Ank

Ank_4

PF12796 Ank_2 20-117 aa PF13637 Ank_4 21-75 aa PF13857 Ank_5 52-96 aa PF13606 Ank_3 56-83 aa PF00023 Ank 58-86 aa PF13637 Ank_4 59-109 aa PF12796 Ank_2 81-134 aa PF13606 Ank_3 88-116 aa PF00023 Ank 88-117 aa PF13637 Ank_4 95-135 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057763645.1`	Pfam	`PF12796`	Ank_2	Repeat	20	117	2.5e-27	96.0	Ankyrin repeats (3 copies)
`XP_057763645.1`	Pfam	`PF13637`	Ank_4	Repeat	21	75	9.4e-26	90.0	Ankyrin repeats (many copies)
`XP_057763645.1`	Pfam	`PF13857`	Ank_5	Repeat	52	96	5.8e-12	46.4	Ankyrin repeats (many copies)
`XP_057763645.1`	Pfam	`PF13606`	Ank_3	Repeat	56	83	4e-14	51.9	Ankyrin repeat
`XP_057763645.1`	Pfam	`PF00023`	Ank	Repeat	58	86	1.8e-15	56.9	Ankyrin repeat
`XP_057763645.1`	Pfam	`PF13637`	Ank_4	Repeat	59	109	9.4e-26	90.0	Ankyrin repeats (many copies)
`XP_057763645.1`	Pfam	`PF12796`	Ank_2	Repeat	81	134	2.5e-27	96.0	Ankyrin repeats (3 copies)
`XP_057763645.1`	Pfam	`PF13606`	Ank_3	Repeat	88	116	4e-14	51.9	Ankyrin repeat
`XP_057763645.1`	Pfam	`PF00023`	Ank	Repeat	88	117	1.8e-15	56.9	Ankyrin repeat
`XP_057763645.1`	Pfam	`PF13637`	Ank_4	Repeat	95	135	9.4e-26	90.0	Ankyrin repeats (many copies)

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA

XM_057907662.1
CGCCTTCTTCAACACTGCTTCACTTTCTCTTACTCTTGAGCTCAAATTTCACATATTCTTCTCTAATCATCTTTCCAAAACCGAGAATTAGATAGATTATAGAGAGTAATAACAAGAGAAATTCATGGCGCCTGATGCTTCTGATGCTCTAGCAGAGATGGAAAAATTTCAACAATTCCTGAATGCCGCACAGACTGGAAATTTAGACCTCCTCAAAAAATTGGCGAAGCAGCTCGATAGTGGAAAGGGGCTAGCTCAAA...

CDS

1 records

下载 CDS FASTA

LOC130984960
ATGGCGCCTGATGCTTCTGATGCTCTAGCAGAGATGGAAAAATTTCAACAATTCCTGAATGCCGCACAGACTGGAAATTTAGACCTCCTCAAAAAATTGGCGAAGCAGCTCGATAGTGGAAAGGGGCTAGCTCAAACGGTAGTAGATGTGAAGGATGCCAACCAGAGAGGGGCTCTGCATTTTGCTGCCAGGGAAGGTCAAACTGAGATTTGCAAGTATTTGCTGGAGGAGTTGAAGATGGACATTAATACAAAGGATGA...

Protein

1 records

下载 Protein FASTA

XP_057763645.1
MAPDASDALAEMEKFQQFLNAAQTGNLDLLKKLAKQLDSGKGLAQTVVDVKDANQRGALHFAAREGQTEICKYLLEELKMDINTKDEDGDTPLTHAARQGHTALAKYLVDHGADPSIPSGLGTTALHHSAGRGNERRRIKEKEESVERGRTKFREEEIGEQLRGEILSHCAACQRIPVFPTSLPKKLGHDQSGSGASSSAASCAGTRGMVDTEDDQVVNIVCSMEERGLISTDELSKILDLVDEWFKQPCIFLSFLLSST...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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JBrowse

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