Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr05G000271`

染色体: Chr05 坐标: 2084021-2086524 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr05G000271`
名称	SmilChr05G000271
描述	uncharacterized SmilChr05G000271
染色体 / SeqID	Chr05 / NC_080391.1
坐标与链方向	2084021 - 2086524 / `-`

ID 对照

NCBI Gene ID	`LOC130984993`
GeneID	`130984993`
locus_tag	`-`
NCBI Name	`LOC130984993`
原始查询	`SmilChr05G000271`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	adenine phosphoribosyltransferase-like protein, putative (DUF2358) [Source:NCBI gene (formerly Entrezgene);Acc:819649]; symbol=AT3G04890; hit=AT3G04890; species=arabidopsis; confidence=high
产物	adenine phosphoribosyltransferase-like protein, putative (DUF2358) [Source:NCBI gene (formerly Entrezgene);Acc:819649]; symbol=AT3G04890; hit=AT3G04890; species=arabidopsis; confidence=high
Arabidopsis	`AT3G04890` (AT3G04890) adenine phosphoribosyltransferase-like protein, putative (DUF2358) [Source:NCBI gene (formerly Entrezgene);Acc:819649] identity=54; qcov=0.909; evalue=5.57e-70; confidence=high
Rice	`Os04g0578200` - identity=27.7; qcov=0.459; evalue=3.17e-12; confidence=low
GO	-
KEGG	-
Pfam	PF10184 (DUF2358)
InterPro	-
eggNOG	-
NR	GeneID:130984993

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Chloroplast	叶绿体	1.00000	`XP_057763696.1`
2	Mitochondrion	线粒体	0.80000	`XP_057763695.1`
3	Chloroplast thylakoid	类囊体	0.60000	`XP_057763696.1`
4	Chloroplast membrane	叶绿体膜	0.40000	`XP_057763696.1`
5	Nucleus	细胞核	0.00000	`XP_057763695.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr5:2084122`	`G`	`A`	EMS_canonical_SNV	stop_gained	4	B107,B54,B86,C20
`Chr5:2084122`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B107,B54,B86,C20
`Chr5:2084158`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B23,D10
`Chr5:2084289`	`TA`	`T`	1bp_deletion	frameshift_variant	1	C48
`Chr5:2084289`	`TA`	`T`	1bp_deletion	CDS_variant	1	C48
`Chr5:2084942`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B12
`Chr5:2085772`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B2
`Chr5:2086157`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B140
`Chr5:2086158`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B120,B73,C72,D10
`Chr5:2086213`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C71
`Chr5:2086217`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B100
`Chr5:2086240`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C45

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057763695.1

223 aa

112

223

DUF2358

PF10184 DUF2358 86-198 aa

XP_057763696.1

220 aa

110

220

DUF2358

PF10184 DUF2358 83-195 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057763695.1`	Pfam	`PF10184`	DUF2358	Domain	86	198	5e-23	82.2	Uncharacterized conserved protein (DUF2358)
`XP_057763696.1`	Pfam	`PF10184`	DUF2358	Domain	83	195	4.8e-23	82.3	Uncharacterized conserved protein (DUF2358)

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057907712.1
AGGAAGAGGTGGAAAATGAGCGTTGCAAGTCCACCCACCACCAACAGAGTCAGAGACACCGAATCAGAATGGCGGGACTTCGCAGCTGCGCATTTGGGCGCCAATTGCGAATTTTGCCGCCAATAGAAAGGAGAATTCATGGCTTCCGTTGCTGCTCAACTGCCCCCAACGGCAAAAGTAAAGAAACTCAAACACCGGAGCTGTTGAAGATTGCCGTGAGTGGTGTGACGGAAATCCTTAGGCTATTTACTCCTGCTGGG...

XM_057907713.1
CAAGTCCACCCACCACCAACAGAGTCAGAGACACCGAATCAGAATGGCGGGACTTCGCAGCTGCGCATTTGGGCGCCAATTGCGAATTTTGCCGCCAATAGAAAGGAGAATTCATGGCTTCCGTTGCTGCTCAACTGCCCCCAACGGCAAAAGTAAAGAAACTCAAACACCGGAGCTGTTGAAGATTGCCGTGAGTGGTGTGACGGAAATCCTTAGGCTATTTACTCCTGCTGGGCGAGATTTAGTGGATGATGAATGGA...

CDS

2 records

下载 CDS FASTA

LOC130984993
ATGGCGGGACTTCGCAGCTGCGCATTTGGGCGCCAATTGCGAATTTTGCCGCCAATAGAAAGGAGAATTCATGGCTTCCGTTGCTGCTCAACTGCCCCCAACGGCAAAAGTAAAGAAACTCAAACACCGGAGCTGTTGAAGATTGCCGTGAGTGGTGTGACGGAAATCCTTAGGCTATTTACTCCTGCTGGGCGAGATTTAGTGGATGATGAATGGAATGAGGAACTTTCAATTTCCAATGCAGATGACGTTCTTTCTAT...

LOC130984993
ATGGCGGGACTTCGCAGCTGCGCATTTGGGCGCCAATTGCGAATTTTGCCGCCAATAGAAAGGAGAATTCATGGCTTCCGTTGCTGCTCAACTGCCCCCAACGGCAAAAGTAAAGAAACTCAAACACCGGAGCTGTTGAAGATTGCCGTGAGTGGTGTGACGGAAATCCTTAGGCTATTTACTCCTGCTGGGCGAGGTAGAACAGATTTAGTGGATGATGAATGGAATGAGGAACTTTCAATTTCCAATGCAGATGACGT...

Protein

2 records

下载 Protein FASTA

XP_057763695.1
MAGLRSCAFGRQLRILPPIERRIHGFRCCSTAPNGKSKETQTPELLKIAVSGVTEILRLFTPAGRGRTDLVDDEWNEELSISNADDVLSIIRSDYEKAYFVTGLFTSAIYAEECIFEDPTIKFRGKELYARNLSLLLPFFENPSIQLEELNKQLDRETITLVASWKLRTYLRLPWKPLICIDGTTTYDLGEDFRIVRHVESWSVSALEAVLQIFTPSSGSPDQ

XP_057763696.1
MAGLRSCAFGRQLRILPPIERRIHGFRCCSTAPNGKSKETQTPELLKIAVSGVTEILRLFTPAGRDLVDDEWNEELSISNADDVLSIIRSDYEKAYFVTGLFTSAIYAEECIFEDPTIKFRGKELYARNLSLLLPFFENPSIQLEELNKQLDRETITLVASWKLRTYLRLPWKPLICIDGTTTYDLGEDFRIVRHVESWSVSALEAVLQIFTPSSGSPDQ

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

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