Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr05G000272`

染色体: Chr05 坐标: 2098379-2109259 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr05G000272`
名称	SmilChr05G000272
描述	protein HASTY 1
染色体 / SeqID	Chr05 / NC_080391.1
坐标与链方向	2098379 - 2109259 / `+`

ID 对照

NCBI Gene ID	`LOC130984996`
GeneID	`130984996`
locus_tag	`-`
NCBI Name	`LOC130984996`
原始查询	`SmilChr05G000272`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	protein HASTY 1
产物	protein HASTY 1
Arabidopsis	`AT3G05040` (HST) ARM repeat superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:819666] identity=61.8; qcov=0.988; evalue=0; confidence=high
Rice	`Os01g0363900` (OsWAK5) - identity=55.7; qcov=1.01; evalue=0; confidence=high
GO	GO:0003723 (RNA binding); GO:0005049 (nuclear export signal receptor activity); GO:0005634 (nucleus); GO:0005737 (cytoplasm); GO:0006405 (RNA export from nucleus); GO:0006611 (protein export from nucleus); GO:0031267 (small GTPase binding); GO:0042565 (RNA nuclear export complex)
KEGG	smil03013 (Nucleocytoplasmic transport - Salvia miltiorrhiza (redroot sage))
Pfam	PF08389 (Xpo1); PF19273 (Exportin-5)
InterPro	-
eggNOG	-
NR	GeneID:130984996

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	1.00000	`XP_057763698.1`
2	Cytoplasm	细胞质	0.80000	`XP_057763698.1`
3	Cytosol	细胞质基质	0.80000	`XP_057763700.1`
4	Nucleus membrane	核膜	0.20000	`XP_057763700.1`
5	Chromosome	染色体	0.00000	`XP_057763698.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr5:2098578`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B38,B39,C13,C44
`Chr5:2098579`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B103,B128,B5,B98
`Chr5:2098655`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	D6
`Chr5:2099651`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B104
`Chr5:2099669`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	A10
`Chr5:2099670`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B100,B55
`Chr5:2099687`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B11
`Chr5:2099700`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B12
`Chr5:2100642`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B12
`Chr5:2100818`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B23,C38
`Chr5:2100855`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B104
`Chr5:2102317`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B122,B131,C82

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057763698.1

1195 aa

598

1195

Xpo1

Exportin-5

PF08389 Xpo1 106-264 aa PF19273 Exportin-5 310-1160 aa

XP_057763699.1

1195 aa

598

1195

Xpo1

Exportin-5

PF08389 Xpo1 106-264 aa PF19273 Exportin-5 310-1160 aa

XP_057763700.1

1055 aa

528

1055

Xpo1

Exportin-5

PF08389 Xpo1 3-124 aa PF19273 Exportin-5 170-1020 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057763698.1`	Pfam	`PF08389`	Xpo1	Repeat	106	264	1.6e-24	87.4	Exportin 1-like protein
`XP_057763698.1`	Pfam	`PF19273`	Exportin-5	Repeat	310	1160	4.9e-296	984.8	Exportin-5 family
`XP_057763699.1`	Pfam	`PF08389`	Xpo1	Repeat	106	264	1.6e-24	87.4	Exportin 1-like protein
`XP_057763699.1`	Pfam	`PF19273`	Exportin-5	Repeat	310	1160	4.9e-296	984.8	Exportin-5 family
`XP_057763700.1`	Pfam	`PF08389`	Xpo1	Repeat	3	124	2.3e-16	60.9	Exportin 1-like protein
`XP_057763700.1`	Pfam	`PF19273`	Exportin-5	Repeat	170	1020	3.5e-296	985.3	Exportin-5 family

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

3 records

下载 cDNA FASTA

XM_057907716.1
GGAGGAAGCAAATATTCTCAATAGAGAAATGATCCCTAAACCCCTGCGGAAGTATTACACGAGTCTTTCAATTTCAAAACCCCTTCTTCCTTGCTAAGCTAAATTAAACTGAGAGAGTTGGATAAATTCTCGCCGCTTATCTCATCTCAGTTGCCGCCGCCGCCGTCGAAGCTCGAAGTAGGAGACGGGGAGGAATGGAGGAGAGCGGAATCTCAAACAATGTGGCGCGAGCCATAGCCACCGCACTCGACTGGACCTCC...

XM_057907715.1
GGAGGAAGCAAATATTCTCAATAGAGAAATGATCCCTAAACCCCTGCGGAAGTATTACACGAGTCTTTCAATTTCAAAACCCCTTCTTCCTTGCTAAGCTAAATTAAACTGAGAGAGTTGGATAAATTCTCGCCGCTTATCTCATCTCAGTTGCCGCCGCCGCCGTCGAAGCTCGAAGTAGGAGACGGGGAGGAATGGAGGAGAGCGGAATCTCAAACAATGTGGCGCGAGCCATAGCCACCGCACTCGACTGGACCTCC...

CDS

3 records

下载 CDS FASTA

LOC130984996
ATGGAGGAGAGCGGAATCTCAAACAATGTGGCGCGAGCCATAGCCACCGCACTCGACTGGACCTCCTCTCCCGATGCTCGCGCCGCCGCTCACTCATACTTGGAAACTATAAAAGCTGGAGACACACGTGTTTTGGCAAGTACCTCGTTTGTTTTGGTTAAGCGAGATTGGTCTCCCGAAATCCGGCTTCATGCTTTTAAAATGCTCCAGCATCTGGTGCGATTACGATGGGATGAACTAAGCCCTGAGGAAAGAAGGCA...

Protein

3 records

下载 Protein FASTA

XP_057763698.1
MEESGISNNVARAIATALDWTSSPDARAAAHSYLETIKAGDTRVLASTSFVLVKRDWSPEIRLHAFKMLQHLVRLRWDELSPEERRHFANVAVDLMSEISNPCEEWALKSQTAALVAEIVRREGLSLWQELWPSIITLSNMGPIQAELVLMMLRWLPEDITVHNEDLEGDRRRMLLRGLSQSLPEIFPLLFTLLERHYGAALMEAGRQQMDVAKQHAAAVIAAINAVNAYAEWAPLSDLAKYGIIYGCGFLLSSPDFRLH...

XP_057763699.1
MEESGISNNVARAIATALDWTSSPDARAAAHSYLETIKAGDTRVLASTSFVLVKRDWSPEIRLHAFKMLQHLVRLRWDELSPEERRHFANVAVDLMSEISNPCEEWALKSQTAALVAEIVRREGLSLWQELWPSIITLSNMGPIQAELVLMMLRWLPEDITVHNEDLEGDRRRMLLRGLSQSLPEIFPLLFTLLERHYGAALMEAGRQQMDVAKQHAAAVIAAINAVNAYAEWAPLSDLAKYGIIYGCGFLLSSPDFRLH...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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